Pairwise Alignments

Query, 636 a.a., Acetoin catabolism regulatory protein from Pseudomonas sp. DMC3

Subject, 591 a.a., Fis family GAF modulated sigma54 specific transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  308 bits (788), Expect = 6e-88
 Identities = 192/556 (34%), Positives = 306/556 (55%), Gaps = 34/556 (6%)

Query: 83  HQQLSGAGHAVLLTDARGVILNCVTAPAERKIFERAGLWLGADWSEACEGTNGIGTCLVE 142
           +Q ++ +   ++L+D  G +L                L +G +W E  +GTN IGT L  
Sbjct: 62  NQMMAHSQSRLILSDRDGYVLCHWGVSRYSDKLANVALDVGVNWREEHKGTNAIGTALTA 121

Query: 143 RQALTIHQDEHFRGRHTGLTCSASPVFDPHGELLAVLDVSSARPDVSRQSQFHTMALVNL 202
           RQ + +  ++HF   H  ++C+ASP+F P GELL  +D++S +   ++Q    T+ L+  
Sbjct: 122 RQTVAVIGEQHFIRHHRFMSCTASPIFSPEGELLGAIDITSEQQRHTQQ----TLVLIAS 177

Query: 203 SAKMIESCYFLRCFDNQWLLRFHLQAESVGLFSEGLLAFDGEGRISAVNQSALNLLGHIR 262
             + IE+        + + +    Q   +    +G++  + +G++   N  A  LL   R
Sbjct: 178 LVQQIETALLCHLPGSHYRIDLAEQPSLITSGWQGIVVANVDGKLLGCNAMAKRLLHRPR 237

Query: 263 GGLLGKPVEAFFDCSLDDLLGRASANASASWPLRTRDGRHLFAVLRGESRKPTAIVPAPI 322
            G              DD+     A+ ++   +      HL      E+R P+ +V   I
Sbjct: 238 IG--------------DDIDRHLGASWNSGEQVCQDQRLHLKTQQLVETR-PSQLVSQQI 282

Query: 323 AAPAPRLSGICLGDEALQAEFRKALRVFERDVPLLINGETGSGKEAFAKAVHQASQRSGN 382
                   G+   D  L+  +++A +V  R++PLLI GETG GKE F K +H  S R+  
Sbjct: 283 --------GVRFRDPKLERAWQQANKVVGRNIPLLICGETGVGKEQFVKKLHGQSTRAQR 334

Query: 383 AFVALNCAAIPESLIESELFGYRGGSFTGARKDGMRGKLQQADGGTLFLDEIGDMPLALQ 442
             VA+NCAA+P  L+ESELFGY+ G+FTGA + G  GK++QADGG LFLDEIG+MPLA Q
Sbjct: 335 PLVAVNCAALPAELVESELFGYQAGAFTGASRQGFEGKIRQADGGFLFLDEIGEMPLATQ 394

Query: 443 TRLLRVLEDRQVVPIGG-EPQAVDVRIISATHRNLLERVEDGSFREDLYYRLNGLEVALP 501
           +RLLRVL++R+VVP+GG     VD+++++ATH +L + V +G+FREDLYYRLNGL+V+LP
Sbjct: 395 SRLLRVLQEREVVPVGGNRSYKVDIQVVAATHADLRQLVSEGAFREDLYYRLNGLQVSLP 454

Query: 502 ALRERSDKSQLLDFLLAEEAGGETILIDEPARQALLAFNWPGNVRQLRNVLRTLAALCDG 561
            LR+R+D  +++  L          L  +  R+ LLA +WPGN+R+L N+++    + DG
Sbjct: 455 PLRQRADIERIIHKLHRRYRQAPQQLCPQLLRR-LLAHDWPGNLRELDNLMQVACLMADG 513

Query: 562 G-RVGVEDLP--VMIRQARPAVVAAQIVA--QPLDDAERVALLNALEQTRWHMTHTAEQL 616
              +  + LP  +  +   P     Q+ A    L       ++++  +   +++  A+ L
Sbjct: 514 DPELNWQHLPDTLQAQLQGPEQAGEQMAACESELSLMVNANIVSSFHRFEGNVSRCAKHL 573

Query: 617 GVSRNTLYRKLRKHGI 632
           G+SRNTLYRKL+  G+
Sbjct: 574 GISRNTLYRKLKALGL 589