Pairwise Alignments

Query, 177 a.a., RNA polymerase sigma factor from Pseudomonas fluorescens SBW25-INTG

Subject, 180 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 67.0 bits (162), Expect = 2e-16
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 6/156 (3%)

Query: 8   IARLFAEQKKALEAFVTRRTGSAQVAADLTQESFLRLARLDSGEKIDNLPAFLFTIASNL 67
           +  +++E    L  ++ ++ G +Q AADL  ++F+R+  L   ++I    AFL T A  L
Sbjct: 17  LTAMYSEHHGWLHGWLRKKLGCSQHAADLAHDAFIRVLMLAEPQQIKEPRAFLATTAGRL 76

Query: 68  VRDHQRQAIRRERLDAGEPSEELPCGNPGADEQLA---AYQQEQLMQDAILALPEATRQI 124
           + D  R   RR    A   +  + C + G  +  A   A Q  + + + +  LP   R+ 
Sbjct: 77  LIDGAR---RRRIEKAYMEALVIQCEDAGMPDPAAIHVALQALERIAEMLAGLPAKAREA 133

Query: 125 FLLYHVDELSYREIGERLSITPRSVEYQLRRALIEC 160
           FLL  +D L+Y EI  RL ++  +V+  +  AL+ C
Sbjct: 134 FLLSRLDGLTYSEIATRLDVSASTVKNYISSALVHC 169