Pairwise Alignments

Query, 177 a.a., RNA polymerase sigma factor from Pseudomonas fluorescens SBW25-INTG

Subject, 170 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 65.5 bits (158), Expect = 5e-16
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 9/159 (5%)

Query: 6   SQIARLFAEQKKALEAFVTRRTGSAQVAADLTQESFLRLARLDSGEKIDNLPAFLFTIAS 65
           S +  L+      L  ++ RR G    AADL Q++++RL +     ++    AFL T+A 
Sbjct: 13  STVEGLYHAHHNWLTGWLRRRLGCPHSAADLAQDTYMRLLQAREAPQLVEPRAFLATVAK 72

Query: 66  NLVRDH-QRQAIRRERLD--AGEPSEELPCGNPGADEQLAAYQQEQLMQDAIL-ALPEAT 121
            ++ +H +RQ + R  L   A  P E  PC     +EQ A   +  L  D +L  LP   
Sbjct: 73  RVLCNHFRRQELERAYLQALAQVPEEVAPC-----EEQKAIIFETLLALDHLLDGLPPLV 127

Query: 122 RQIFLLYHVDELSYREIGERLSITPRSVEYQLRRALIEC 160
           ++ FLL  VD L   EI   L I+  +V+  L +A + C
Sbjct: 128 KRAFLLAQVDGLGQGEIARELGISLATVKRYLNKAAMRC 166