Pairwise Alignments

Query, 177 a.a., RNA polymerase sigma factor from Pseudomonas fluorescens SBW25-INTG

Subject, 191 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 86.3 bits (212), Expect = 3e-22
 Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 5/161 (3%)

Query: 6   SQIARLFAEQKKALEAFVTRRTGSAQVAADLTQESFLRLARLDSGEKIDNLPAFLFTIAS 65
           ++  ++F  Q+  +EA V+RR G    A+DL QE FLR  R     K++ L  +L   A 
Sbjct: 19  ARFVQVFQAQRARMEALVSRRVGCRATASDLVQELFLRFWRRPE-VKVEALDTYLLRCAG 77

Query: 66  NLVRDHQRQAIRRERL-DAGEPSEELPCGNPGADEQLAAYQQE-QLMQDAILALPEATRQ 123
           NL  DH R    RER+ +A  P  E       A EQ      + Q ++  + ALPE TRQ
Sbjct: 78  NLAIDHLRSESSRERVAEAAVPVSEASLAQ--APEQAVEVDHDLQRIEATLRALPERTRQ 135

Query: 124 IFLLYHVDELSYREIGERLSITPRSVEYQLRRALIECRAYI 164
           IFLL  +    Y EI + + ++  +VE  + RAL  C+A +
Sbjct: 136 IFLLNRIHGCKYSEIAKAMQLSQSAVEKHMMRALEACKASV 176