Pairwise Alignments

Query, 162 a.a., type VI secretion system tube protein Hcp from Pseudomonas fluorescens SBW25-INTG

Subject, 180 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score = 86.7 bits (213), Expect = 2e-22
 Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 11/169 (6%)

Query: 1   MAVDMFLKLGDIKGESRDQAHRDEIDITEWAWGLSQTGSMHSGTGGGAG--KADFANLNL 58
           MA D ++++  I GE  D+ H+D I++  + +G +Q  S  + + GGA   +   ++  +
Sbjct: 9   MAFDAYIQIDGIPGEVLDEKHKDWIEVLGYEYGATQATSATASSSGGASSERVALSDFKI 68

Query: 59  TKPLDKSSPNLMMACASGKHYPEARLVVRKAGGTSPVEYLVITLKEVMV--VSYGTGADS 116
            K +DK+S  L   C +GKH  + +L V +AGG   V YL I ++EV+V  V +  G + 
Sbjct: 69  RKAVDKASAKLFEHCCTGKHIAKLKLNVNRAGG-DKVTYLTIDMEEVVVSSVKFVAGGNQ 127

Query: 117 K------DDLLYDRIALNFASVDISYQPQKADGAKDGGPVKFGWNIRQN 159
                   DL  + I+ NFA +  +Y  Q     + GG +  GW+   N
Sbjct: 128 SGEDKAVSDLPVEEISFNFARIKTTYTQQNRTDGQAGGNIVGGWDRTAN 176