Pairwise Alignments

Query, 179 a.a., sigma-70 family RNA polymerase sigma factor from Pseudomonas fluorescens SBW25-INTG

Subject, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 73.9 bits (180), Expect = 1e-18
 Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 8/167 (4%)

Query: 11  ADAFRGFYTD----ILYFLRKRTDNASDAADMTQDVFTQWLDYRDRAKVEQPRAFLFQMA 66
           AD     Y D    +L +L++       A D++QD F + L         +PRAFL  +A
Sbjct: 9   ADLVGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTPREPRAFLAAVA 68

Query: 67  RNLLRDHWRKQKVRQTAHHDQADRDVEPATDEQNEPMVAAQRLQRLEQLKEVLAELSPRR 126
           + L+ DH+R+  + Q      A+  + P   EQ  P +    L+ L+ +  +L +LS + 
Sbjct: 69  KGLMFDHFRRAALEQAY---LAELALIPEA-EQPSPEMQHLILEDLKAIDRLLGKLSSKA 124

Query: 127 REALMLHRFEGLSQTQIAERMGISTSMVEKHIAFALLHCKRRLQPEP 173
           R A +  R +G+   +IAER+G+S S V ++IA  +  C   L  EP
Sbjct: 125 RAAFLHSRLDGMGHAEIAERLGVSVSRVRQYIAQGMRQCYVALYGEP 171