Pairwise Alignments

Query, 727 a.a., DNA helicase II from Pseudomonas fluorescens SBW25

Subject, 729 a.a., Superfamily I DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score = 1158 bits (2995), Expect = 0.0
 Identities = 588/730 (80%), Positives = 651/730 (89%), Gaps = 4/730 (0%)

Query: 1   MRDDLSLLLNSLNDAQRQAVAAPVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSIL 60
           M DDLSLLLNSLNDAQRQAVAAP+GRQLVLAGAGSGKTRVLVHRIAWL QVE AS HSIL
Sbjct: 1   MHDDLSLLLNSLNDAQRQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLNQVERASLHSIL 60

Query: 61  SVTFTNKAAAEMRHRIEQLMGISPAGMWVGTFHGLAHRLLRAHWQEAGLSQTFQILDSDD 120
           SVTFTNKAAAEMR RIEQL+ ++P GMWVGTFHGLAHRLLRAHWQEA L+Q FQILDSDD
Sbjct: 61  SVTFTNKAAAEMRQRIEQLLHVNPQGMWVGTFHGLAHRLLRAHWQEAKLAQNFQILDSDD 120

Query: 121 QQRLVKRVIRELGLDEQRWPARQAQWFINGQKDEGLRPQHIQASGDLFLATMRSIYEAYE 180
           QQRLVKRVIRELGLDEQRWPARQAQW+IN QKDEGLRP++IQ  GDLFLAT   IYEAYE
Sbjct: 121 QQRLVKRVIRELGLDEQRWPARQAQWWINAQKDEGLRPRNIQPGGDLFLATQLKIYEAYE 180

Query: 181 AACVRAGVIDFSELLLRALDLWRDNPGLLAHYQKRFRHILVDEFQDTNAVQYAWLRLLAK 240
            AC RAGVIDFSELLLRALDLWRD+PGLL HYQ+RFRH+LVDEFQDTNAVQYAWLRLLAK
Sbjct: 181 EACARAGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLAK 240

Query: 241 GGDSLMVVGDDDQSIYGWRGAKIENIYQYSEDFPDAVTIRLEQNYRSTAGILKAANALIA 300
           GG+SLMVVGDDDQSIYGWRGA+IEN++Q+S+DFPDA TIRLEQNYRSTA ILKAANALIA
Sbjct: 241 GGESLMVVGDDDQSIYGWRGARIENLHQFSQDFPDAETIRLEQNYRSTACILKAANALIA 300

Query: 301 NNTGRLGKELWTDGGEGEAINLYAAFNEHDEARYVVETIESALKTGLARSDIAILYRSNA 360
           NN GRLGKELWT G EGE I+LYAAFNEHDEARYVVE+IE A++ G++RS+IAILYRSNA
Sbjct: 301 NNQGRLGKELWTSGCEGEPISLYAAFNEHDEARYVVESIEKAIRDGMSRSEIAILYRSNA 360

Query: 361 QSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINIPARGI 420
           QSRVLEEALLRE+IPYRIYGGQRFFERAEIKNAMAYLRL++ R NDAALERVIN+PARGI
Sbjct: 361 QSRVLEEALLREKIPYRIYGGQRFFERAEIKNAMAYLRLIQTRDNDAALERVINVPARGI 420

Query: 421 GEKTVEAIRDHARHADVSMWEAMRLLIANKGLTGRAAGALGVFVELIENLAAKCAEMPLH 480
           GEKTVE +R  AR   +SMW A+   +  K ++GRAA AL  FVEL++ LA K   M LH
Sbjct: 421 GEKTVECLRQLAREQGLSMWAALHQAVGTKAVSGRAASALNGFVELVDTLALKVEGMQLH 480

Query: 481 LMTQTVIEQSGLIAYHEAEKGEKGQARVENLEELVSAARAFEN-TEEDEEL-TPLAAFLG 538
            M Q VIEQSGL+AYH  EKGEK QARVENLEELVSAARAF++ +EED+++ +PLAAFL 
Sbjct: 481 NMAQLVIEQSGLLAYHRDEKGEKAQARVENLEELVSAARAFDSYSEEDDDIQSPLAAFLD 540

Query: 539 HASLEAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEER 598
           HASLEAG+ QA +HEDS+QLMTLHSAKGLEFP VFLVGMEEGLFPHKMSLEE GRLEEER
Sbjct: 541 HASLEAGEQQAGDHEDSVQLMTLHSAKGLEFPLVFLVGMEEGLFPHKMSLEESGRLEEER 600

Query: 599 RLAYVGITRAMQNLVMTYAETRRLYGSETYNKVSRFVREVPKGLIQEVRLSNSVSRPFGG 658
           RLAYVGITRAMQ LV+TYAETRRLYGSETYNK+SRFVRE+P  L+QEVRLSN+V+R F  
Sbjct: 601 RLAYVGITRAMQQLVITYAETRRLYGSETYNKISRFVREIPPALVQEVRLSNTVTRSF-N 659

Query: 659 GQQQNSSSMFAGSEIPETQFSLGQQVRHSVFGEGVILNFEGAGAQARVQVNFA-EGSKWL 717
           G+  + SS+F G+ +PET FSLGQ+VRHS+FGEG ILNFEG+GAQARVQVNF  EGSKWL
Sbjct: 660 GKSMSGSSLFDGAGVPETPFSLGQRVRHSLFGEGTILNFEGSGAQARVQVNFEDEGSKWL 719

Query: 718 MMGYAKLEAI 727
           M+ YAKLEA+
Sbjct: 720 MLSYAKLEAL 729