Pairwise Alignments

Query, 727 a.a., DNA helicase II from Pseudomonas fluorescens SBW25

Subject, 857 a.a., DNA helicase II protein from Sinorhizobium meliloti 1021

 Score =  476 bits (1226), Expect = e-138
 Identities = 282/685 (41%), Positives = 396/685 (57%), Gaps = 64/685 (9%)

Query: 9   LNSLNDAQRQAVAAPVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNKA 68
           ++ LN  QR+AV A  G  LVLAGAG+GKTRVL  RIA ++    A P  IL+VTFTNKA
Sbjct: 44  VSGLNPEQREAVEALEGPVLVLAGAGTGKTRVLTTRIAHILSTGRAYPSQILAVTFTNKA 103

Query: 69  AAEMRHRIEQLMGISPAGM-WVGTFHGLAHRLLRAHWQEAGLSQTFQILDSDDQQRLVKR 127
           A EM+ RI  L+G +  GM W+GTFH +  +LLR H +  GL   F ILD+DD  RL+K+
Sbjct: 104 AREMKERIGVLVGHAVEGMPWLGTFHSIGVKLLRRHAELVGLRSDFTILDTDDVVRLIKQ 163

Query: 128 VIRELGLDEQRWPARQAQWFINGQKDEGLRPQHIQASGDLFLATM--RSIYEAYEAACVR 185
           +I+  GLD++RWPA+Q    I+  K++GL P  I        A    R +Y AY+   + 
Sbjct: 164 LIQAEGLDDKRWPAKQFAGMIDTWKNKGLDPSQIPEGDARAFANGKGRELYAAYQNRLLT 223

Query: 186 AGVIDFSELLLRALDLWRDNPGLLAHYQKRFRHILVDEFQDTNAVQYAWLRLLAKGGDS- 244
               DF +LLL  + ++R NP +L  Y  +FR+ILVDE+QDTN  QY WLRLLA+   + 
Sbjct: 224 LNACDFGDLLLHPIRMFRANPDVLKEYHAKFRYILVDEYQDTNTAQYMWLRLLAQQTQAS 283

Query: 245 ----------------------------------------------LMVVGDDDQSIYGW 258
                                                         +  VGDDDQSIYGW
Sbjct: 284 RNRPSSGLPATFSPSDGEKGQAARSQSPLSPSERGEGRGEGQPTVNICCVGDDDQSIYGW 343

Query: 259 RGAKIENIYQYSEDFPDAVTIRLEQNYRSTAGILKAANALIANNTGRLGKELWTD--GGE 316
           RGA+++NI ++ +DFP A  I+LE+NYRST  IL AA  LIA+N GRLGK L+T+    +
Sbjct: 344 RGAEVDNILRFEKDFPGAKVIKLERNYRSTEHILGAAAHLIAHNEGRLGKTLFTERTNPD 403

Query: 317 GEAINLYAAFNEHDEARYVVETIESALKTGLARSDIAILYRSNAQSRVLEEALLRERIPY 376
            E ++++AA++  +EAR + E IE   +     +DI+IL R++ Q R  E+  +   + Y
Sbjct: 404 DEKVHVHAAWDSEEEARAIGEEIEQLQRKKHNLNDISILVRASFQMREFEDRFVTLGLNY 463

Query: 377 RIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINIPARGIGEKTVEAIRDHARHAD 436
           R+ GG RF+ER EI++AMAY RL+    +D A ER++N P RG+GE TV  + D+AR  D
Sbjct: 464 RVIGGPRFYERLEIRDAMAYFRLVCQPADDLAFERIVNTPKRGLGETTVRTLHDYARARD 523

Query: 437 VSMWEAMRLLIANKGLTGRAAGALGVFVELIENLAAKCAEMPLHLMTQTVIEQSGLIAYH 496
           + M  A   ++    L  +A   L   V             P   + + ++++SG  A  
Sbjct: 524 IPMLAAASDIVETDELKPKARKGLFDVVADFRRWQTLLETTPHTELAERILDESGYTAMW 583

Query: 497 EAEKGEKGQARVENLEELVSAARAFENTEEDEELTPLAAFLGHASLEAGDTQADEHEDSI 556
           +A+K  +   R+ENL+EL+ +  AFE+         +  FL H +L   D + +E+ D++
Sbjct: 584 QADKSAEAPGRLENLKELIRSMEAFES---------MRGFLEHVAL-VMDAEQNENMDAV 633

Query: 557 QLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGR--LEEERRLAYVGITRAMQNLVM 614
            +MTLHSAKGLEF  VFL G EEGLFPH+ +L+E GR  LEEERRLAYVGITRA +   +
Sbjct: 634 SIMTLHSAKGLEFDTVFLPGWEEGLFPHQRALDEGGRAGLEEERRLAYVGITRAKRRCHI 693

Query: 615 TYAETRRLYGSETYNKVSRFVREVP 639
            +   RR++G       SRF+ E+P
Sbjct: 694 WFVSNRRIHGLWQSTLPSRFLDELP 718