Pairwise Alignments

Query, 727 a.a., DNA helicase II from Pseudomonas fluorescens SBW25

Subject, 768 a.a., UvrD/REP helicase (NCBI) from Rhodospirillum rubrum S1H

 Score =  493 bits (1269), Expect = e-143
 Identities = 299/757 (39%), Positives = 433/757 (57%), Gaps = 60/757 (7%)

Query: 9   LNSLNDAQRQAVAAPVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNKA 68
           L  LN  QR AV    G  LVL+GAG+GKTRVL  R+A ++      P  +L+VTFTN+A
Sbjct: 25  LAGLNPEQRAAVTTTDGPVLVLSGAGTGKTRVLTARLAQILATRPVRPWQVLAVTFTNRA 84

Query: 69  AAEMRHRIEQLMGISPAGMWVGTFHGLAHRLLRAHWQEAGLSQTFQILDSDDQQRLVKRV 128
           A EMR R   ++G     +W+GTFH L  R+LR H    GL   F ILD+DDQ RL+K++
Sbjct: 85  AREMRERAGAMIGPMAEQVWLGTFHALGVRMLRRHGDLVGLRSGFTILDADDQLRLLKQI 144

Query: 129 IRELGLDEQRWPARQAQWFINGQKDEGLRPQHIQAS-GDLFLATMRSI--YEAYEAACVR 185
           +   G+D ++W  +     I   KD+GL P+ + A  G    A  R++  Y+ Y+     
Sbjct: 145 LEAEGIDTKKWTPQAGMGLIQRWKDKGLLPEAVPAGDGGREYAGGRAVDLYKQYQQRLAV 204

Query: 186 AGVIDFSELLLRALDLWRDNPGLLAHYQKRFRHILVDEFQDTNAVQYAWLRLLAKGGDSL 245
               DF +LLL  L ++  +P +LA Y K F +ILVDE+QDTN  QY WLRLLA+G  ++
Sbjct: 205 VNAADFGDLLLHCLTIFTKHPDVLADYSKMFHYILVDEYQDTNVAQYLWLRLLARGHGNI 264

Query: 246 MVVGDDDQSIYGWRGAKIENIYQYSEDFPDAVTIRLEQNYRSTAGILKAANALIANNTGR 305
             VGDDDQSIY WRGA++ NI ++  DFP A  +RLE+NYRST  IL AA+ LI +N GR
Sbjct: 265 CCVGDDDQSIYSWRGAEVGNILRFEADFPGATVVRLERNYRSTPTILAAASGLIRHNKGR 324

Query: 306 LGKELWTDGGE--GEAINLYAAFNEHDEARYVVETIESALKTGLARSDIAILYRSNAQSR 363
           LGK+L    G+  G+A+ +   ++  +EAR VV+ IE+  + G   + +A+L R+  Q+R
Sbjct: 325 LGKDLRAGEGDEAGDAVIVRGLWDGEEEARRVVDDIETRQRAGDRLNGMAVLVRAGFQTR 384

Query: 364 VLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINIPARGIGEK 423
             EE L+   +PYR+ GG RF+ER EI++A+AYLRL+    +  A ER+IN+P RG+G+ 
Sbjct: 385 AFEERLILAGVPYRVVGGARFYERQEIRDAIAYLRLVAQPDDSLAFERIINLPRRGLGDA 444

Query: 424 TVEAIRDHARHADVSMWEAMRLLIANKGLTGRAAGALGVFVELIENLAAKCAEMPLHLMT 483
           +++ +   +R A +S+  A R  I    L  +A  AL  F++ +    +    M    + 
Sbjct: 445 SLQTLMRASRMASISLMRAAREAIETDELRPQARKALRAFLDDMGRWRSLADAMAPDELC 504

Query: 484 QTVIEQSGLIAYHEAEKGEKGQARVENLEELVSAARAFENTEEDEELTPLAAFLGHASLE 543
            TV+++SG +     +K    Q RVENL+ELVSA + FE+         L AFL H SL 
Sbjct: 505 GTVLDESGYLEMWRKDKSPDAQGRVENLKELVSALKEFES---------LGAFLEHVSL- 554

Query: 544 AGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPG--RLEEERRLA 601
             D +A   ED++ LMTLH+AKGLEF  VFL G EE +FPH+ +L+E G   LEEERRLA
Sbjct: 555 VMDNEARATEDAVTLMTLHAAKGLEFDTVFLPGWEEEIFPHRRALDENGAEALEEERRLA 614

Query: 602 YVGITRAMQNLVMTYAETRRLYGSETYNKVSRFVREVPKGLIQEVRLSNSVSRPFGGGQQ 661
           YVG+TRA +  ++++   RR+Y        SRF+ E+P  +++     +S S  +G G Q
Sbjct: 615 YVGLTRARKRAIISFVANRRVYNEWRACLPSRFIDELPPEVVER----DSASGVYGSGAQ 670

Query: 662 QNSSS------------------MFAGSEIP--------------ETQFSL--GQQVRHS 687
             + +                    A + +P              + Q SL  G +V H 
Sbjct: 671 GYADAPGGWGRLGGPGSWGGGWGNAAPARVPAAGDTPWQTRDRSGDDQPSLRPGDRVFHD 730

Query: 688 VFGEGVILNFEGAGAQARVQVNFAE-GSKWLMMGYAK 723
            FG G +L    A  Q R++++F + G K +M G+ +
Sbjct: 731 KFGGGTVL----AADQGRLEIDFDKAGIKKVMGGFVR 763