Pairwise Alignments

Query, 727 a.a., DNA helicase II from Pseudomonas fluorescens SBW25

Subject, 771 a.a., Probable ATP-dependent DNA helicase II UvrD1 from Mycobacterium tuberculosis H37Rv

 Score =  495 bits (1274), Expect = e-144
 Identities = 312/750 (41%), Positives = 424/750 (56%), Gaps = 44/750 (5%)

Query: 8   LLNSLNDAQRQAVAAPVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNK 67
           LL+ LN  QRQAV       L++AGAGSGKT VL  RIA+L+         IL++TFTNK
Sbjct: 19  LLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNK 78

Query: 68  AAAEMRHRIEQLMGISPAGMWVGTFHGLAHRLLRAHWQEA---GLSQTFQILDSDDQQRL 124
           AAAEMR R+  L+G     MWV TFH    R+LR   Q A   GL+  F I D+DD +RL
Sbjct: 79  AAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRN--QAALIEGLNSNFSIYDADDSRRL 136

Query: 125 VKRVIRELGLDEQRWPARQAQWFINGQKDEGLRPQHIQAS----GDLFLATMRSIYEAYE 180
           ++ V R+LGLD +R+  R     I+  K+E + P    A      D     + S+Y+ Y+
Sbjct: 137 LQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDDLARAVASVYDEYQ 196

Query: 181 AACVRAGVIDFSELLLRALDLWRDNPGLLAHYQKRFRHILVDEFQDTNAVQYAWLRLLAK 240
                A  +DF +L+   + + +  P +  +Y++RFRH+LVDE+QDTN  QY  +R L  
Sbjct: 197 RRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVRELV- 255

Query: 241 GGDS--------LMVVGDDDQSIYGWRGAKIENIYQYSEDFPDAVTIRLEQNYRSTAGIL 292
           G DS        L VVGD DQSIY +RGA I NI  +  D+PD  TI LEQNYRST  IL
Sbjct: 256 GRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNYRSTQNIL 315

Query: 293 KAANALIANNTGRLGKELWTDGGEGEAINLYAAFNEHDEARYVVETIES-ALKTGLARSD 351
            AAN++IA N GR  K LWTD G GE I  Y A NEHDEAR+V E I++ A  + +  +D
Sbjct: 316 SAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEITYND 375

Query: 352 IAILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALER 411
           +A+ YR+N  SR LEE L+R  IPY++ GG RF+ER EI++ +AYLR+L+  G+  +L R
Sbjct: 376 VAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSLRR 435

Query: 412 VINIPARGIGEKTVEAIRDHARHADVSMWEAMRLLIANKG----LTGRAAGALGVFVELI 467
           ++N P RGIG++    +  +A +  V   +A  L+ A +G    L  RA  A+  FVE+ 
Sbjct: 436 ILNTPRRGIGDRAEACVAVYAENTGVGFGDA--LVAAAQGKVPMLNTRAEKAIAGFVEMF 493

Query: 468 ENLAAKCAEMPLHLMTQTVIEQSGLIAYHEAEKGEKGQARVENLEELVSAARAFENTEE- 526
           + L  +  +  L  + + V+E++G     EA    +  AR++NL ELVS A  F    E 
Sbjct: 494 DELRGRLDD-DLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSVAHEFSTDREN 552

Query: 527 ------DEELTP----LAAFLGHASLEAGDTQADEH-EDSIQLMTLHSAKGLEFPYVFLV 575
                 D+E  P    LA FL   SL A   +  EH    + LMTLH+AKGLEFP VF+ 
Sbjct: 553 AAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAKGLEFPVVFVT 612

Query: 576 GMEEGLFPHKMSLEEPGRLEEERRLAYVGITRAMQNLVMTYAETRRLYGSETYNKVSRFV 635
           G E+G+FPH  +L+ P  L EERRLAYVGITRA Q L ++ A  R  +G    N  SRF+
Sbjct: 613 GWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSWGQPMLNPESRFL 672

Query: 636 REVPKGLIQEVRLS--NSVSRPFGG----GQQQNSSSMFAGSEIPETQFSLGQQVRHSVF 689
           RE+P+ LI   R +   S S P  G    G  + S +    S  P     +G +V H  +
Sbjct: 673 REIPQELIDWRRTAPKPSFSAPVSGAGRFGSARPSPTRSGASRRPLLVLQVGDRVTHDKY 732

Query: 690 GEGVILNFEGAGAQARVQVNFAEGSKWLMM 719
           G G +    G G  A   ++F    +  +M
Sbjct: 733 GLGRVEEVSGVGESAMSLIDFGSSGRVKLM 762