Pairwise Alignments

Query, 628 a.a., DEAD/DEAH box helicase from Pseudomonas fluorescens SBW25

Subject, 491 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  461 bits (1186), Expect = e-134
 Identities = 254/490 (51%), Positives = 324/490 (66%), Gaps = 22/490 (4%)

Query: 1   MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           MSF SLGLS  +++A+   GY  P+P+Q +AIPAVL G+D+M AAQTGTGKT GF LP+L
Sbjct: 1   MSFTSLGLSAPILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN 120
           E L       +  R   +Q R LVLTPTRELAAQ+ +S   Y + L   SA +FGGVG++
Sbjct: 61  ELL------SQGPRARSKQVRALVLTPTRELAAQIAESVTTYGQHLPLRSAVVFGGVGIS 114

Query: 121 PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
           PQ+  + RGVD+LVA PGRLLDL  Q +V  S +E LVLDEADRMLDMGF+HD+KK+LA 
Sbjct: 115 PQISQLKRGVDILVATPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAI 174

Query: 181 LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL 240
           LP KRQNL+FSATFS +I  LA  L++NP  I VTP N+T   ++Q +  +  + K A L
Sbjct: 175 LPPKRQNLMFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAAL 234

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSV 300
             LI  G W+QVLVF+RTKHGANRLA++L+  G+TA AIHGNKSQ ARTKALA+FK+G V
Sbjct: 235 VKLIQQGDWQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDV 294

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           R+LVATDIAARGLDIDQLP VVNF+LPNV EDYVHRIGRTGRAG  G+A+SLV+ +E KL
Sbjct: 295 RVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAKL 354

Query: 361 LKSIERMTKQKIADGDLMGFDASAVEAEKPEVRER-PDVRNPRNPRGPKGDGPNGG--GG 417
           L  IER+  + +   ++ GF+ +    E     +R    + PRNP+ PK +         
Sbjct: 355 LADIERLIGKLLPRAEVEGFEPTHTLPETNLTPKRHGQHKGPRNPK-PKSNSQRSSNRSS 413

Query: 418 GGGRRDKGKD--KGGKEKAPTNGRGER----------PAREQKPREGTPAREQRQPSQPP 465
            G R DK     +G + +    G+G R          PA E +  +    +E R  + P 
Sbjct: 414 NGQRSDKAGQPRRGDQAQGNKEGQGRRRTGASTGTSKPASEGQQAQNQGKQEHRDGNAPA 473

Query: 466 RAAADRAPDE 475
           R    R P +
Sbjct: 474 RRRRRRRPSQ 483



 Score = 32.7 bits (73), Expect = 4e-05
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 529 PRNSSGGTTGTPP--AKRSGPRNGAPRDGQARREDSRSNNRRPARDDQPRLSEPAVQNPR 586
           P ++   T  TP    +  GPRN  P+    R  +  SN +R  +  QPR  + A  N  
Sbjct: 376 PTHTLPETNLTPKRHGQHKGPRNPKPKSNSQRSSNRSSNGQRSDKAGQPRRGDQAQGNKE 435

Query: 587 G 587
           G
Sbjct: 436 G 436



 Score = 29.6 bits (65), Expect = 3e-04
 Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 9/84 (10%)

Query: 517 RGGQPQGARQ-----NGPRNSSGGTTGTPPAKRSGPRNG----APRDGQARREDSRSNNR 567
           R GQ +G R      N  R+S+  + G    K   PR G      ++GQ RR    S   
Sbjct: 389 RHGQHKGPRNPKPKSNSQRSSNRSSNGQRSDKAGQPRRGDQAQGNKEGQGRRRTGASTGT 448

Query: 568 RPARDDQPRLSEPAVQNPRGGPAP 591
                +  +      Q  R G AP
Sbjct: 449 SKPASEGQQAQNQGKQEHRDGNAP 472