Pairwise Alignments

Query, 628 a.a., DEAD/DEAH box helicase from Pseudomonas fluorescens SBW25

Subject, 535 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  456 bits (1172), Expect = e-132
 Identities = 279/574 (48%), Positives = 348/574 (60%), Gaps = 52/574 (9%)

Query: 1   MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           MSF++LGLS  L +A+   GY  P+P+Q +AIPAVL G+D+M AAQTGTGKT GF LP+L
Sbjct: 1   MSFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN 120
           E L   GH  KS      Q R LVLTPTRELAAQV +S + Y + L   SA +FGGV +N
Sbjct: 61  E-LLAKGHKAKSG-----QTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPIN 114

Query: 121 PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
           PQ+  +  GVDVLVA PGRLLDL  Q +V  + +EILVLDEADRMLDMGF+ D+KK+LA 
Sbjct: 115 PQINKLRHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILAL 174

Query: 181 LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL 240
           LPAKRQNL+FSATFS +I  LA  L+++P  I VTP N     ++Q +  +  + K ALL
Sbjct: 175 LPAKRQNLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQKSALL 234

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSV 300
             LI    W+QVLVF+RTKHGANRLA+ L +  ++A AIHGNKSQ ARTKALADFK+G V
Sbjct: 235 IQLIKQENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEV 294

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           R+LVATDIAARGLDIDQLP VVNF+LPNV EDYVHRIGRTGRAG +G+A+SLV+ +E KL
Sbjct: 295 RVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKL 354

Query: 361 LKSIERMTKQKIADGDLMGFDASAVEAEKPEVRERPDVRNPRNPRGPKGDGPNGGGGGGG 420
           LK IER+  + +   ++ GF  S V A  PE    P                        
Sbjct: 355 LKDIERLINRVLERQEVEGF--SPVHA-LPETTLNP------------------------ 387

Query: 421 RRDKGKDKGGKEKAPTNGRGERPAREQKPREGTPAREQ--RQPSQPPRAAADRAPDEFLD 478
              +GKD   K KA  N R  R A +  PR G+    Q  R+ SQ   +A+ R  +E   
Sbjct: 388 ---QGKDT--KVKAVANHRKHRSAGKPAPRSGSGRDTQGNRENSQRQNSASSRNSNEH-- 440

Query: 479 DDVDNFGNRVDYVPQAKPAQGRGRRPGAPAQGAGAG-----APRGGQPQGARQNGPRNSS 533
              +N    V   P  KP     +R G  A  A AG      P  G  Q +       S+
Sbjct: 441 ---NNTEAAVARSP--KPKSKHPQRDGGTANSATAGNNAKAKPHSGAQQRSHAERSEKSN 495

Query: 534 GGTTGTPPAKRSGPRNGAPRDGQARREDSRSNNR 567
                    K   P++  P   Q ++   R++NR
Sbjct: 496 NDGRRQEQPKGRNPQSAKPASNQPKQHSHRADNR 529



 Score = 30.0 bits (66), Expect = 3e-04
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 542 AKRSGPRNGAPRDGQARREDSRSNNRRPARD-DQPRLSEPAVQNPRGGPAPKIIHKE 597
           A +  PR+G+ RD Q  RE+S+  N   +R+ ++   +E AV      P PK  H +
Sbjct: 406 AGKPAPRSGSGRDTQGNRENSQRQNSASSRNSNEHNNTEAAVAR---SPKPKSKHPQ 459