Pairwise Alignments

Query, 836 a.a., ATP-dependent helicase HrpB from Pseudomonas fluorescens SBW25

Subject, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

 Score =  244 bits (622), Expect = 3e-68
 Identities = 158/468 (33%), Positives = 246/468 (52%), Gaps = 33/468 (7%)

Query: 4   LPIDDVLPALRDALAIRHEAVLEAPPGAGKTTRVPLALLN----EPWLTGQTILMLEPRR 59
           LP+      +  A+A     ++    G+GKTT++P         +  L G T    +PRR
Sbjct: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHT----QPRR 142

Query: 60  LAARAAAERLASELGEKVGETVGYRIRLDSKVGPNTRIEVVTEGILTRRLQDDPALDGVG 119
           LAAR+ A R+A E+  ++G  VGY++R   ++   T+I+++T+GIL   +Q+D  L+   
Sbjct: 143 LAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYD 202

Query: 120 LLIFDEFHERSLDADLALALSLNGRELFRDEQPLKILLMSATLEGERLASLLDDAPILRS 179
            +I DE HERSL+ D  L      ++L      LK+++ SAT++ ER +    +API+  
Sbjct: 203 TIIIDEAHERSLNIDFILGYL---KQLLPRRPDLKVIITSATIDPERFSKHFSNAPIIEV 259

Query: 180 EGRMFPVQMRWGRPYQPGEFIEPR------VVQTILEALHDETGSVLVFLPGQAEIRRVS 233
            GR +PV++R+ RP    +  E        + Q + E   +  G +L+F+ G+ EIR   
Sbjct: 260 SGRTYPVEVRY-RPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIR--- 315

Query: 234 QQLADALGDRT--DVLLCPLHGELDLNAQRAAIDPAPAGKRKVVLATNIAETSLTINGVR 291
              ADAL  R   D  + PL+  L    Q     P     R++VLATN+AETSLT+ G++
Sbjct: 316 -DTADALSKRNLRDTEIVPLYARLSAGEQNKIFQPHAG--RRIVLATNVAETSLTVPGIK 372

Query: 292 VVIDAGLARVPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEDQHEGLA 351
            VID G AR+ R+   + + RL  + IS+ASA QR GR GR E G+C RL+SE+      
Sbjct: 373 YVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRP 432

Query: 352 AYGSAEILAADLAGLALQLARWGVTPAQ-LVWLDVPPTAAYAQAQDLLQRLGALNDD--- 407
            +   EIL  +LA + LQ+   G+   +   +++ P          LL+ LGA+ND    
Sbjct: 433 EFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKD 492

Query: 408 ---TLTAHGQKMAELPAHPRIAHLLLRGQDLGLAATACDVAALLGERD 452
               LT  G+++A LP  PR+A ++L    LG       +A+ L  +D
Sbjct: 493 PKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQD 540