Pairwise Alignments

Query, 836 a.a., ATP-dependent helicase HrpB from Pseudomonas fluorescens SBW25

Subject, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

 Score =  639 bits (1649), Expect = 0.0
 Identities = 380/846 (44%), Positives = 527/846 (62%), Gaps = 45/846 (5%)

Query: 1   MNSLPIDDVLPALRDALAIRHEAVLEAPPGAGKTTRVPLALLNEPWLTGQTILMLEPRRL 60
           M+ LPI +V+P L   +    + +L+A PGAGK+T  PL LL      G+ I+MLEPRRL
Sbjct: 1   MSPLPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLLQAGGFHGK-IIMLEPRRL 59

Query: 61  AARAAAERLASELGEKVGETVGYRIRLDSKVGPNTRIEVVTEGILTRRLQDDPALDGVGL 120
           AAR  A  LA +LGE+VG+ VGYR+R +++V   T++E+VTEGI+TR LQ+DP LDGV +
Sbjct: 60  AARNIARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDV 119

Query: 121 LIFDEFHERSLDADLALALSLNGRELFRDEQPLKILLMSATLEGERLASLLDDAPILRSE 180
           LIFDEFHERS+ AD ALAL+L  +   R++  LKI++MSATL+ + L +LL  A  + S+
Sbjct: 120 LIFDEFHERSIHADTALALALEVQSALRED--LKIVVMSATLDQQALQNLLPQASYVESQ 177

Query: 181 GRMFPVQMRWGRPYQPGEFIEPRVV---QTILEALHDETGSVLVFLPGQAEIRRVSQQLA 237
           GR FP+++R    YQP    EP V    + I   L  ETGS+L FLPG A I ++++QL+
Sbjct: 178 GRGFPIEIR----YQPLRSDEPLVTAMQRQIRHLLQHETGSLLAFLPGAASINQLTEQLS 233

Query: 238 DALGDRTDVLLCPLHGELDLNAQRAAIDPAPAGKRKVVLATNIAETSLTINGVRVVIDAG 297
           D     ++V +CPL+G+++  AQ+ AI P  AG+RKVVLATNIAETSLTI G+R+V+D+G
Sbjct: 234 DLA---SEVEICPLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETSLTIEGIRIVLDSG 290

Query: 298 LARVPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEDQHEGLAAYGSAE 357
           L R  RFD  +G+TRL+  RI+++SA QRAGRAGRLEPG+C RL+SE Q +        E
Sbjct: 291 LERSARFDLKTGITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLKQQPWVPEPE 350

Query: 358 ILAADLAGLALQLARWGVTPAQLVWLDVPPTAAYAQAQDLLQRLGALNDDT-LTAHGQKM 416
           +L  DLA LAL+LA+WG  P+ L WL++PP++A+AQAQ LLQRLG L+  T +TA G++ 
Sbjct: 351 MLHTDLAPLALELAQWGAQPSDLAWLNLPPSSAFAQAQQLLQRLGLLDARTQITAAGKEA 410

Query: 417 AELPAHPRIAHLLLRGQDLGLAA--TACDVAALLGERDILRGGGADLHSRLALLSGEERA 474
             L   PRIA +LL    LG +A  +A  +  LL E +           R  +       
Sbjct: 411 HLLGVEPRIAAMLLSADRLGESALQSALALTVLLEEPE-----------RQVIDVQHSLH 459

Query: 475 RGSQGG-------VQRAKQLARQYRGYLRGQAAQPVADPDHPRWLGALLALAYPDRVAQQ 527
           R  QG        +QRA+ LA +         A  ++  D   WL  +  LA+PDR+AQQ
Sbjct: 460 RWQQGRHPKQKLLIQRAQSLAHKL------DTAFSLSSVD-SAWLPLVACLAFPDRIAQQ 512

Query: 528 RRPGGAEYRLANGRAAVFAEADSLMKQPWLVIADLGSRQGQREERIYLAADFDPMLFDTV 587
           R     ++ LANG  A  A  D L    +LV  DL   Q Q  + I+ A + D    + V
Sbjct: 513 RGQQTGQFLLANGHGAWLAVEDRLSAADYLVALDLMRGQTQASQ-IFSALELDIHALERV 571

Query: 588 LAEQVCNVDQLDWDEREGVLRAERQRKVGELVLSREPLTGLDESARSQALVNLVRRKGLE 647
           L   +  V+Q+DWDE+ G L AE Q ++ +LVL RE L   D+   +QAL++ VRRKGL 
Sbjct: 572 LPALISRVEQVDWDEKAGRLSAEAQWRIDQLVLRREKLPEPDKQKMTQALLSYVRRKGLT 631

Query: 648 LLPWTPELRQWQARVMLLRQLDAGKTSEWPDISDKALLASLEHWLMPYLGKVSRLSHFAS 707
           +L W+ +  +W AR     +    +   WP + D+ LLA LE WL PYL  V+ +    S
Sbjct: 632 VLQWSEDASEWLARARCAAEWLPEEA--WPALDDETLLARLELWLEPYLAGVTSVKGLQS 689

Query: 708 LDISSFLHNLLPWPLPQRLDELAPQHVKVPSGSSVRLDYS-EQPPILAVRLQELFGLADT 766
           + +   L + L W L Q+LDE  P H  +P+G+  ++ Y     P L+VR+QE+FG   +
Sbjct: 690 VSVLQALKHYLGWELSQQLDEWLPTHHLLPTGNHKKIRYQLGMEPTLSVRMQEVFGEQSS 749

Query: 767 PRIAGGRQVVKLHLLSPARRPVQVTQDLANFWRSTYAEVKKDLKGRYPKHYWPDDPLVAE 826
           PR+A G + V + LLSPA+RP+QVT+DLA+FW   Y EV+K++KGRYPKH WPDDP    
Sbjct: 750 PRVAKGTRAVVMELLSPAQRPLQVTRDLASFWAGAYKEVQKEMKGRYPKHVWPDDPANHV 809

Query: 827 ATARIK 832
           AT++ K
Sbjct: 810 ATSKTK 815