Pairwise Alignments
Query, 836 a.a., ATP-dependent helicase HrpB from Pseudomonas fluorescens SBW25
Subject, 860 a.a., ATP-dependent helicase HrpB (NCBI) from Rhodospirillum rubrum S1H
Score = 721 bits (1860), Expect = 0.0
Identities = 428/845 (50%), Positives = 538/845 (63%), Gaps = 25/845 (2%)
Query: 4 LPIDDVLPALRDALAIRHEAVLEAPPGAGKTTRVPLALLNEPWLTGQTILMLEPRRLAAR 63
LPID VLPAL +ALA AVL APPGAGKTTRVP ALL WL GQ ++MLEPRRLA R
Sbjct: 25 LPIDPVLPALLEALASHGRAVLIAPPGAGKTTRVPPALLGALWLGGQKVVMLEPRRLATR 84
Query: 64 AAAERLASELGEKVGETVGYRIRLDSKVGPNTRIEVVTEGILTRRLQDDPALDGVGLLIF 123
AAA R+A E GE VG+ G+R+R +S+ GP TR+EV+TEGILTRR+QDDP L GVG +I
Sbjct: 85 AAARRMAFEAGEAVGQRFGFRVRGESRSGPLTRVEVMTEGILTRRIQDDPELAGVGCVIL 144
Query: 124 DEFHERSLDADLALALSLNGRELFRDEQPLKILLMSATLEGERLASLLDDAPILRSEGRM 183
DEFHER L DLA AL + R + L++L+MSATL+G +A+L+DDAP++ S GR
Sbjct: 145 DEFHERGLQGDLAFALLREIQGALRPD--LRLLVMSATLDGAAIAALMDDAPVIESHGRA 202
Query: 184 FPVQMRWG-RPYQPGEFIEPRVVQTILEALHDETGSVLVFLPGQAEIRRVSQQLADALGD 242
FPV + G RP + P + +TIL AL DE GSVL FLPG+ EI V+ LA AL
Sbjct: 203 FPVTITHGERP--AARDLGPAMARTILRALEDEPGSVLAFLPGEREIAAVAGALARAL-- 258
Query: 243 RTDVLLCPLHGELDLNAQRAAIDPAPAGKRKVVLATNIAETSLTINGVRVVIDAGLARVP 302
D +L PL+G L Q AAI P P G+RKVVLAT+IAETSLTI GVR+V+D+GL R P
Sbjct: 259 PADTVLRPLYGALPPAEQDAAISPCPPGQRKVVLATDIAETSLTIEGVRIVVDSGLRRSP 318
Query: 303 RFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEDQHEGLAAYGSAEILAAD 362
RFDP +G++RLDT RIS+A A QR GRAGRLEPGVC RLW E +H L A + EILAAD
Sbjct: 319 RFDPQTGLSRLDTVRISQAGAEQRRGRAGRLEPGVCLRLWPEAEHRALPAQETPEILAAD 378
Query: 363 LAGLALQLARWGV-TPAQLVWLDVPPTAAYAQAQDLLQRLGALND-DTLTAHGQKMAELP 420
LA LAL+LARWG A L W PP AQA+DLL LGAL L+AHG MA LP
Sbjct: 379 LAPLALELARWGARDAAALCWPTPPPPGPLAQARDLLTSLGALEPAGGLSAHGAAMAALP 438
Query: 421 AHPRIAHLLLRGQDLGL--AATACDVAALLGERDILR-GGGA----DLHSRLALLSGEER 473
HPR+AH++L + G A AC +AALL ERDILR G GA DL +RL +L G+ R
Sbjct: 439 LHPRLAHMVLAAKADGADDGALACLLAALLAERDILRPGPGAARDRDLTTRLEILIGQGR 498
Query: 474 ARGSQGGVQRAKQL--ARQYRGYLRGQAAQPVADPDHPRWLGALLALAYPDRVAQQRRPG 531
R G + R L R LR A + P G +LA AYPDR+AQ R
Sbjct: 499 -RAPAGQILRQPTLGAVRDEAARLRQLAGIAASASPEPARCGRVLARAYPDRIAQARPGQ 557
Query: 532 GAEYRLANGRAAVFAEADSLMKQPWLVIADLGSRQGQREERIYLAADFDPMLFDTVLAEQ 591
+ L++GR A+ D L +L +A++ E R++LAA D + + E
Sbjct: 558 PGRFLLSSGRGALIDVGDPLAAAAFLAVAEVDG--AGSEARVFLAAPLDRADLEELFDEA 615
Query: 592 VCNVDQLDWDEREGVLRAERQRKVGELVLSREPLTGLDESAR-SQALVNLVRRKGLELLP 650
+ + + WD R + A +R++G LV L + AR + A+ +RR GL LP
Sbjct: 616 LRPCETVTWDPRAEAVVARVERRLGALVFESRDLPDRADPARTTPAVCAGIRRLGLGCLP 675
Query: 651 WTPELRQWQARVMLLRQLDAGKTSEWPDISDKALLASLEHWLMPYLGKVSRLSHFASLDI 710
WT E + +ARV L ++ + +WPD+SD ALLASL WL P+L ++R S FA +D+
Sbjct: 676 WTRETDRLRARVAFLHRVHS--ADDWPDLSDDALLASLADWLGPWLDGITRRSAFARIDL 733
Query: 711 SSFLHNLLPWPLPQRLDELAPQHVKVPSGSSVRLDYS-EQPPILAVRLQELFGLADTPRI 769
+ L L+ W LD LAP + VPSG V LDY P+LA R+Q+LFGL TP +
Sbjct: 734 MAALKALIGWRRLADLDRLAPAQMDVPSGVKVALDYEVPDGPVLAARVQQLFGLTRTPAV 793
Query: 770 AGGRQVVKLHLLSPARRPVQVTQDLANFWRSTYAEVKKDLKGRYPKHYWPDDPLVAEATA 829
G V +HLLSPA RP+QVT+DLA FW+ +YAEV+KD++GRYPKH WP+DP AEAT
Sbjct: 794 LDGGHPVLVHLLSPAGRPLQVTRDLAGFWKGSYAEVRKDMRGRYPKHPWPEDPTGAEATN 853
Query: 830 RIKPR 834
R+KPR
Sbjct: 854 RVKPR 858
Score = 35.8 bits (81), Expect = 1e-05
Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 9/149 (6%)
Query: 171 LDDAPILRSEGRMFPVQMRWGRPYQPGEFIEPRVVQTILEALHDETGSVLVFLPGQAEIR 230
+D + +LR+E V P+ PG V+ +LEAL +VL+ PG +
Sbjct: 1 MDPSRLLRTERERKAVMP----PFSPGPLPIDPVLPALLEALASHGRAVLIAPPGAGKTT 56
Query: 231 RVSQQLADA--LGDRTDVLLCPLHGELDLNAQRAAIDPAPAGKRKVVLATNIAETSLTIN 288
RV L A LG + V+L P A+R A + A ++ S +
Sbjct: 57 RVPPALLGALWLGGQKVVMLEPRRLATRAAARRMAFEAGEAVGQRFGFRVRGESRSGPLT 116
Query: 289 GVRVVIDAGLARVPRFDP---GSGMTRLD 314
V V+ + L R + DP G G LD
Sbjct: 117 RVEVMTEGILTRRIQDDPELAGVGCVILD 145