Pairwise Alignments

Query, 836 a.a., ATP-dependent helicase HrpB from Pseudomonas fluorescens SBW25

Subject, 826 a.a., RNA helicase, ATP-dependent DEAH box, HrpB type from Marinobacter adhaerens HP15

 Score =  761 bits (1966), Expect = 0.0
 Identities = 430/835 (51%), Positives = 550/835 (65%), Gaps = 17/835 (2%)

Query: 4   LPIDDVLPALRDALAIRHEAVLEAPPGAGKTTRVPLALLNEPWLTGQTILMLEPRRLAAR 63
           LPID +LP L+ AL      +L+APPGAGKTTRVP ALL+ PW     ILMLEPRRLAAR
Sbjct: 2   LPIDAILPDLKAALERTTTVLLQAPPGAGKTTRVPAALLDAPWRGDGKILMLEPRRLAAR 61

Query: 64  AAAERLASELGEKVGETVGYRIRLDSKVGPNTRIEVVTEGILTRRLQDDPALDGVGLLIF 123
           +AA  +A +L E+ G+TVGYR RLD++V   TRIEVVTEGILTR +Q DP L+    +IF
Sbjct: 62  SAARFMARQLNEQPGQTVGYRTRLDTRVSAATRIEVVTEGILTRLIQADPMLEEYAAVIF 121

Query: 124 DEFHERSLDADLALALSLNGRELFRDEQPLKILLMSATLEGERLASLLDDAPILRSEGRM 183
           DEFHERSL ADL LAL    ++  R++  L++L+MSATL+   +A +L D P++ SEGR 
Sbjct: 122 DEFHERSLQADLGLALVRESQQALRED--LRLLVMSATLDTGPIAQVLGDVPVITSEGRA 179

Query: 184 FPVQMRWGRPYQPGEFIEPRVVQTILEALHDETGSVLVFLPGQAEIRRVSQQLADALGDR 243
           FPV + +    + G  ++ +V   + EAL +++GS+LVFLPG  EIRRV QQL   L DR
Sbjct: 180 FPVDVHYRPLPRSGRMVD-QVTAVVREALAEQSGSLLVFLPGVGEIRRVEQQLRANLPDR 238

Query: 244 TDVLLCPLHGELDLNAQRAAIDPAPAGKRKVVLATNIAETSLTINGVRVVIDAGLARVPR 303
             V+L PL+G L    Q  AI PAP G+RKVVLAT IAETSLTI GVRVVID G  R   
Sbjct: 239 --VMLAPLYGNLKSEQQDQAISPAPEGQRKVVLATAIAETSLTIEGVRVVIDCGQQRRAV 296

Query: 304 FDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEDQHEGLAAYGSAEILAADL 363
           FDP SGMTRL T R+SRASA QR GRAGR+EPGVCYRLWSE +  GLA Y   EIL ADL
Sbjct: 297 FDPNSGMTRLVTGRVSRASAEQRKGRAGRMEPGVCYRLWSESEQFGLADYTPPEILEADL 356

Query: 364 AGLALQLARWGVTPAQLV-WLDVPPTAAYAQAQDLLQRLGALNDD-TLTAHGQKMAELPA 421
           A L L+LA+WG   A  V W+D PP A + QA  LLQ L  L+ D  +T HG+   EL  
Sbjct: 357 APLVLELAQWGAREADAVAWIDKPPAAHWRQAVALLQWLDLLDSDGAITDHGKAARELGI 416

Query: 422 HPRIAHLLLRGQDLGLAATACDVAALLGERDIL-RGGGADLHSRLALLSGEERARGSQGG 480
           HPR+AH++L+G+ +GL   A  VAALL ERD+L  G GAD+H R+ +  GE R R     
Sbjct: 417 HPRLAHMVLKGRSIGLGGAAAAVAALLEERDLLGPGTGADMHERVRVFFGERRDRTLD-- 474

Query: 481 VQRAKQLARQYRGYLRGQAAQPVADPDHPRWLGALLALAYPDRVAQQRRPGGAEYRLANG 540
           V R K + RQ    L G  A     P     +G LLALAYPDR+A++R    A Y+L+NG
Sbjct: 475 VARLKAV-RQSARRLSGPGATEATPPTETE-IGRLLALAYPDRIARRRSDKAARYQLSNG 532

Query: 541 RAAVFAEADSLMKQPWLVIADLGSRQGQREERIYLAADFDPMLFDTVLAEQVCNVDQLDW 600
           + AV  E D L +  WLV A+L  +   RE  IYLAA  D    +  LA+ +  +++  W
Sbjct: 533 KGAVLREDDPLARHEWLVAAELDGQ--AREATIYLAAPVDIPDLELDLADHIKEIEEALW 590

Query: 601 DEREGVLRAERQRKVGELVLSREPLTGLDESARSQALVNLVRRKGLELLPWTPELRQWQA 660
           D+ +G + A R RK+GELVL  +PL  +D     Q L++ +R+KGLE LPW+   RQW+A
Sbjct: 591 DDSQGKILARRARKLGELVLEEKPLGRVDPELVRQGLLSAIRKKGLESLPWSDGSRQWRA 650

Query: 661 RVMLLRQLDAGKTSEWPDISDKALLASLEHWLMPYLGKVSRLSHFASLDISSFLHNLLPW 720
           R+ LL +      S WPD  D ALL +LE WL P+L  ++R S  A +D+ + L++L+ +
Sbjct: 651 RLRLLAR--TFPDSGWPDTDDAALLDNLEVWLGPFLVGMTRWSDLARIDLLAALNSLIDY 708

Query: 721 PLPQRLDELAPQHVKVPSGSSVRLDY-SEQPPILAVRLQELFGLADTPRIAGGRQVVKLH 779
           P  Q+L  LAP H+ +P+G  V LDY ++  P+LA +LQ LFG  +TP +AGGR  V LH
Sbjct: 709 PAQQQLQSLAPTHLTIPTGQRVSLDYTADNGPVLAAKLQALFGWKETPAVAGGRVPVVLH 768

Query: 780 LLSPARRPVQVTQDLANFWRSTYAEVKKDLKGRYPKHYWPDDPLVAEATARIKPR 834
           LLSPA+RP+ VT DLA FWR+ Y EV+KD++GRYPKH WP+DP  AEA    K R
Sbjct: 769 LLSPAQRPLAVTADLAGFWRNAYPEVRKDMRGRYPKHPWPEDPFTAEAQQGTKKR 823