Pairwise Alignments

Query, 836 a.a., ATP-dependent helicase HrpB from Pseudomonas fluorescens SBW25

Subject, 1311 a.a., RNA helicase, ATP-dependent DEAH box, HrpA type from Marinobacter adhaerens HP15

 Score =  268 bits (684), Expect = 2e-75
 Identities = 170/458 (37%), Positives = 259/458 (56%), Gaps = 22/458 (4%)

Query: 4   LPIDDVLPALRDALAIRHEAVLEAPPGAGKTTRVPLALLNEPWLTGQTILMLEPRRLAAR 63
           LP+ + +  +R+A+      ++    G+GKTT++P   +N        I   +PRR+AAR
Sbjct: 86  LPVSERVDDIREAIENHQVVIIAGETGSGKTTQIPKICMNSGRGIRGLIGHTQPRRIAAR 145

Query: 64  AAAERLASELGEKVGETVGYRIRLDSKVGPNTRIEVVTEGILTRRLQDDPALDGVGLLIF 123
           + A R+A E+GE++G+ +GY++R        +R++V+T+GIL   +Q D  LD    +I 
Sbjct: 146 SVAARIAEEIGEQIGQQIGYQVRFTDNTSEQSRVKVMTDGILLAEVQHDRFLDRYDTIII 205

Query: 124 DEFHERSLDADLALALSLNGRELFRDEQPLKILLMSATLEGERLASLLDDAPILRSEGRM 183
           DE HERSL+ D  L      R+L      LK+++ SAT+E ER +   D AP++   GR 
Sbjct: 206 DEAHERSLNIDFLLGYL---RQLLPKRPDLKVIITSATIEVERFSEFFDKAPVIEVSGRT 262

Query: 184 FPVQMRWGRPYQPGEFIEPRV-VQTILEAL-----HDET-----GSVLVFLPGQAEIRRV 232
           +PV +R+ RP    E    +     +L AL     H+ +     G +LVFLPG+ EIR +
Sbjct: 263 YPVDVRY-RPLTGDEDDRDQGWTDGVLGALDEIEQHERSQKQPPGDILVFLPGEREIRNL 321

Query: 233 SQQLADALGDRTDVLLCPLHGELDLNAQRAAIDPAPAGKRKVVLATNIAETSLTINGVRV 292
           S+ L       T+VL  PL+  L  NA++  +  +  G+R +VL+TN+AETSLT+ G+R 
Sbjct: 322 SKVLRHVDLRHTEVL--PLYSRLS-NAEQNRVFQSHKGRR-IVLSTNVAETSLTVPGIRY 377

Query: 293 VIDAGLARVPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEDQHEGLAA 352
           VID G+AR+ R+   S + RL  + IS+ASA QRAGR GR+ PG+C+RL+ E        
Sbjct: 378 VIDTGVARISRYSVRSKIQRLPVEPISQASANQRAGRCGRVAPGICFRLYDETDFINRPE 437

Query: 353 YGSAEILAADLAGLALQLARWGVTP-AQLVWLDVPPTAAYAQAQDLLQRLGALNDD-TLT 410
           Y   EIL  +LA + LQ+A  G+    Q  +L+ P          LL+ LGA++D   +T
Sbjct: 438 YTDPEILRTNLASVILQMATSGLGEIRQFPFLEAPDKRQVNDGYKLLEELGAVDDKRRVT 497

Query: 411 AHGQKMAELPAHPRIAHLLLRGQDLG-LAATACDVAAL 447
             G+ MA LP  PR+A +L+   +LG L+ T   +A L
Sbjct: 498 RLGRTMARLPLDPRLARMLVTAAELGSLSETLVIIAGL 535