Pairwise Alignments

Query, 1224 a.a., exodeoxyribonuclease V subunit beta from Pseudomonas fluorescens SBW25

Subject, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

 Score =  716 bits (1848), Expect = 0.0
 Identities = 497/1236 (40%), Positives = 666/1236 (53%), Gaps = 75/1236 (6%)

Query: 8    LAFPLKGSQLIEASAGTGKTFTISALYLRLVLGHGGDEAGFGRELLPPQILVVTFTDAAT 67
            L FPL G++LIEASAGTGKT+TI+ LYLRLVLGHG  E      L   QILVVTFT+AAT
Sbjct: 15   LRFPLHGARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAAT 74

Query: 68   KELRERIRIRLAEAARFFREEIEQPDALIADLRAEYPPEQWPACANRLDIAAQWMDEAAV 127
             ELR+RIR RL +A   F       D L+  L AE+         + L  A + MDEAA+
Sbjct: 75   AELRDRIRRRLHDARLAFARGASD-DPLLRSLLAEFTDHN--LAVSLLLSAERQMDEAAI 131

Query: 128  STIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGEVLRDYWRLFCYPMHDDALNWVRSN 187
             TIH +CQRML ++AF+SGS F     TD S L  +V+ DYWR   YP+     + VR  
Sbjct: 132  FTIHGFCQRMLTQNAFESGSRFENEFVTDESRLKAQVVADYWRRQFYPLPISLASEVRRL 191

Query: 188  WGGPAALMPRVRALFGSERPTGETREPAELINACLQERREA-LQTLKAPWQQWAAELRDI 246
            W  P+AL+  + A + S  P   T    E   A LQ+ + A +  +K   Q W  E  +I
Sbjct: 192  WPAPSALLAEI-AGYLSGPPVKLTTPLMEGDLAALQQAQIARICEIK---QHWLVEREEI 247

Query: 247  CLQAVAAKTVDGRKMQARYFEPWFEKISAWAADETLEQLDIGTGFTRLTPDGM-AEAWKG 305
                 A    D  K            + AWA  ET   L + +     T  G+ A++ KG
Sbjct: 248  ---EPAVTGSDLHKNSQNALLRRLPILDAWAQSET-HDLHVPSELEEFTQSGLLAKSKKG 303

Query: 306  EPPQHPGIDAMAGLKAALDALPTPDAA-VLQHAAGWVGKRFEDEKRRRAEMGFDDMLIRL 364
             PPQ    + +    A   +L TP     + H   W+ K     K     + FDD+L +L
Sbjct: 304  NPPQLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKA----KSTHHWLSFDDLLTQL 359

Query: 365  NAALQADGGERLASVIREQFPVALIDEFQDTDPVQYSIFDSIYRIEENHLDSGLFLIGDP 424
            +AAL  D    L   IR  +PVA+IDEFQDTDP+QYSIF  +Y    ++   GL +IGDP
Sbjct: 360  SAALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYL---DYPQCGLLMIGDP 416

Query: 425  KQAIYAFRGADIYTYLRARQSTTGRHHTLGTNFRSSHAMVEAVNHVFQRAETGRGAFLFR 484
            KQAIYAFRGADI+TY++AR      H+TLGTN+RSS AMV AVN VF  A      F++ 
Sbjct: 417  KQAIYAFRGADIFTYIKARNQVNA-HYTLGTNWRSSAAMVAAVNQVFSSATH---PFIYS 472

Query: 485  EPNGENPVPFHSVLSQ--GRKEQLQVNGQTLPAMNLWHLPT-DQPVSNAVYRQQLAAACA 541
            +      +PF  V +     K    + GQ  PA+  W     D+P S   Y  Q+A ACA
Sbjct: 473  DD-----IPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACA 527

Query: 542  THIVELLNGGQQGTAGFLRPDVSFTGVLPSDIAILVRDGKEAQAVRTELAARGVRSVYLS 601
              I  +L     G A F R +    G    D+A+LVR G EA+ VR  L+ +G+ SVYLS
Sbjct: 528  AQIQHILTASASGAATFHRGEAIEAG----DLAVLVRTGNEARMVRDALSQQGIASVYLS 583

Query: 602  DKDSVFAAQEAHDLLAWLKACAEPDVERPLRAALACVTLNLSLPELERLNQDELAWESRV 661
            ++DSVFA+  A D+   L A  +P+ ER LRAA+A     L+  EL+ LN DE  WE  +
Sbjct: 584  NRDSVFASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLI 643

Query: 662  MQFRGYRAIWRTQGVLPMLRRLLHDFKLPQTLIARSDGERVLTNLLHLSELLQQAASELD 721
             +FR YR +W  +GVLPMLR +L    + +  +A S+GER LT+ LH+SELLQQA  E+D
Sbjct: 644  AEFRQYRRLWSERGVLPMLRAVLTQRHIAERWLAESEGERWLTDYLHISELLQQATREID 703

Query: 722  GEQALIRHLAEHLALSGQ---AGEEQILRLESDEQLVKVVTIHKSKGLEYDLVFLPFICS 778
             +Q L+R L + +A + Q     +EQI RLES+ +LV++VTIHKSKGLEY LVFLPF+ S
Sbjct: 704  SDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYPLVFLPFVMS 763

Query: 779  AKPVDGSRLPLHYHDEHGKSHVSLRPTPELIAQADNERLAEDLRLLYVALTRAKHACWLG 838
             +     +   +Y  E   + V L    E +A+AD ERLAEDLRLLYVALTRA + C++G
Sbjct: 764  YRESSEGK---YYDAESATTWVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIG 820

Query: 839  IADLKRGNSNS--SVLHLSALGYLLGAGASLGESAGLARWLLDLQAGCPAIDYAQVPEAQ 896
            IA L+ GNS+   +  H SA+G+LL  G   G  A L + LL      P +     P+  
Sbjct: 821  IAPLRNGNSSQEPTSAHRSAMGFLLQDGQE-GGIADLQQALLKQCENLPDVVQCPPPKRF 879

Query: 897  PIVFHPPR-NEATLRAPLLPKRKAAENWWIASYSALRIGDSMSAATLEAPESP-QAQKLF 954
               + PP+ +E  L A  L  +     W + SYS L +  S       A   P Q   L 
Sbjct: 880  EQAYQPPQLDERELTAREL-SQAIDRRWRVTSYSGLVMQSS------HARHDPLQELPLL 932

Query: 955  DDERLDPDAPRE-----VAASGGDIHRFPRGPNPGTFLHGLLEWAGEEGFNVTPEAIEKA 1009
            +    D D+ +E     + +    I  FPRG  PGTFLH L E    +  +   E   K 
Sbjct: 933  EVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQ-SAHSEPNTKI 991

Query: 1010 VGARCNRRNWEG-WIITLSGWLGHLLQTPLPVDNGHVSLNGLQQYQ--IEMEFWFASHKV 1066
            +         E  W+  L   +  +L TPL  D   + L  +   Q   E+EF      +
Sbjct: 992  ILELMESEQIESEWLPVLQQLVDTVLSTPL--DGKALRLQQIMAAQRLTELEFLLPIEVL 1049

Query: 1067 DVLALDKLVCQY----THSGVSRVAAEPVLLNGMFKGFIDLTFEHDGRYYVADYKSNWLG 1122
            D   L+++  ++     H+G     A    + GM KGFIDL F++ GRYYV D+KSN LG
Sbjct: 1050 DAPTLNRITQRHDPLSAHAGDLGFHA----VQGMLKGFIDLVFQYQGRYYVLDWKSNHLG 1105

Query: 1123 PDDSAYTQDAMEQSILEHRYDLQYVLYLLALHRQLKARLPDYDYDRHVGGALYLFLRGTR 1182
             D +AY    +  ++ EHRYDLQY +Y LALHR L++RL  Y+Y++H GG  YLFLRG  
Sbjct: 1106 DDPAAYHPQRLGSAMAEHRYDLQYQIYALALHRFLRSRLAHYNYEQHFGGVFYLFLRGMD 1165

Query: 1183 S-ASQGAYFTRPPRDLIEGLDLLFQGKTLPPKVEPA 1217
                QG + T+P   L++ LD L  G+ L  +   A
Sbjct: 1166 GRGDQGVFHTKPSLALLDELDGLIAGRELAQRASKA 1201