Pairwise Alignments

Query, 1224 a.a., exodeoxyribonuclease V subunit beta from Pseudomonas fluorescens SBW25

Subject, 1189 a.a., ATP-dependent nuclease/helicase from Sinorhizobium meliloti 1021

 Score = 80.1 bits (196), Expect = 1e-18
 Identities = 163/646 (25%), Positives = 252/646 (39%), Gaps = 97/646 (15%)

Query: 341 VGKRFEDEKRRRAEMGFDDMLIRLNAAL-QADGGERLASVIREQFPVALIDEFQDTDPVQ 399
           + + +E  K+ R+++ F+D++ R  A L ++D G  +   + +     L+DE QDT P Q
Sbjct: 369 LNRDYEALKKARSQLDFEDLIHRTAALLARSDVGAWVHYKLDQGIDHILVDEAQDTSPAQ 428

Query: 400 YSIFDSI----YRIEENHLDSG-LFLIGDPKQAIYAFRGADIYTY-----LRARQSTTGR 449
           ++I  S+    +  E    D   +F +GD KQ+IY+F+GA    +     L  R+   G 
Sbjct: 429 WTIIQSLAADFFAGETARADDRTIFAVGDEKQSIYSFQGARPERFSRESTLTERRVRAGN 488

Query: 450 HH----TLGTNFRSSHAMVEAVNHVFQRAETGRGAFLFREPNGENPVPFHSVLSQGRKEQ 505
            H     L  +FRS+  ++ AV+ VF      RG                S  S+     
Sbjct: 489 KHFSPIRLQLSFRSTVDVLSAVDTVFANPGNARGL---------------SARSEAIVHA 533

Query: 506 LQVNGQTLPAMNLWHLPTDQPVSNAVYRQQLAAACATHIVELLNGGQQGTAGFL-----R 560
               GQ   A++LW +   +P ++       A   AT     +N   +  A  L     R
Sbjct: 534 SNRIGQP-GAVDLWDVIAPEPAASE--EDWTAPFDATPERAPVNILARRIAAVLEDWIGR 590

Query: 561 PDVSFTGV----LPSDIAILVRDGKE-AQAVRTELAARGVRSVYLSDKDSVFAAQEAHDL 615
             V   GV     P D+ +LVR       A+   L  RG   V  +D+  + +     DL
Sbjct: 591 ETVIEKGVRRAMRPGDVIVLVRKRDAFVNALTRALKRRGNIPVAGADRLVLTSHIAVQDL 650

Query: 616 LAWLKACAEPDVERPLRAALACVTLNLSLPEL----ERLNQDELAW--------ESRVMQ 663
           +A  +    P+ +  L A L    L+L   ++     R  + E  W        E     
Sbjct: 651 IALGRFVLLPEDDLSLAALLKSPLLDLGEEDVFELAARRTEGESLWRRLRQAGAEETSRY 710

Query: 664 FRGYRAIWRTQGVLPMLRRLLHDFKLPQTLIARSDGERVLTNLL--HLSELLQQAAS-EL 720
               R + R  G+   L  L HDF     ++    G R     L   +S++L +  +  L
Sbjct: 711 HEAVRTLSRYSGLAREL--LPHDFY--ARVLGADGGRRAFLARLGSEVSDILDEFLTFAL 766

Query: 721 DGEQALIRHLAEHLALSGQAGEEQILRLESDEQL--VKVVTIHKSKGLEYDLVFLPFICS 778
           D E+  +  L     +S    E   ++ E D++   V+V+T+H +KGLE  +VFL     
Sbjct: 767 DHERNGLPGL--QAFISTLEIEAPTVKREQDKERDEVRVMTVHAAKGLEAPVVFLVDGGG 824

Query: 779 AKPVDGSRLPLHYHDEHGKSHVSLR--------PTPELIAQADNERL-----AEDLRLLY 825
              V      L + ++    H +L           P  +  ADNERL      E  RLLY
Sbjct: 825 EAFVRQQVSDLRFLEKAQVDHSTLTVPVWRAPGSAPNSLIAADNERLKKLAEEEYRRLLY 884

Query: 826 VALTRAKHACWLGIADLKRGNSNSSVLHLSALGYLL----GAGASLGESAGLARWL---- 877
           V +TRA  A  L +   +    N+   H    G L     G G      AG   W     
Sbjct: 885 VGMTRA--ADRLIVCGYRGQRQNTDTWHSMVQGTLAQDLKGRGTPRLFRAGSEEWQGIAW 942

Query: 878 ------LDLQAGCPAIDYAQVPEA--QPIVFHPPRNEATLRAPLLP 915
                  DL       + +Q P A     +F PP     L  PL P
Sbjct: 943 REAHVPRDLPTSEGRSEESQRPTAGLPTALFTPPAAPRRLPRPLAP 988



 Score = 45.4 bits (106), Expect = 3e-08
 Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 14/145 (9%)

Query: 2   TRKPLALAFPLKGSQLIEASAGTGKTFTISALYLRLVLGHGGDEAGFGRELLPPQILVVT 61
           T +  ALA     S  + A+AG+GKT  ++   +RL+L      AG      P  IL +T
Sbjct: 20  TTQRQALASDPACSAWVSANAGSGKTHVLTQRVIRLLL------AG----CRPSAILCLT 69

Query: 62  FTDAATKELRERIRIRLAEAARFFREEIEQPDALIADLRAEYPPEQWPACANRLDI-AAQ 120
           +T AA  E+  R+  +LAE A      +E+    I  +  + PP      A RL   A +
Sbjct: 70  YTKAAASEMSNRVFEKLAEWATLDDTTLEK---RIEAIEGKRPPTAKIQEARRLFARALE 126

Query: 121 WMDEAAVSTIHSWCQRMLREHAFDS 145
                 + TIH++C+ +L +   ++
Sbjct: 127 TPGGLKIQTIHAFCEALLHQFPLEA 151