Pairwise Alignments

Query, 1224 a.a., exodeoxyribonuclease V subunit beta from Pseudomonas fluorescens SBW25

Subject, 1187 a.a., UvrD/REP helicase (NCBI) from Rhodospirillum rubrum S1H

 Score = 87.8 bits (216), Expect = 5e-21
 Identities = 161/588 (27%), Positives = 239/588 (40%), Gaps = 90/588 (15%)

Query: 319 LKAALDALPTPDAA-VLQHAAGWVGKRFEDEKRRRAEMGFDDMLIRLNAALQADGGER-L 376
           L+  L A  T  A+  L    G + K ++  KR    M ++D+++     L  DG    +
Sbjct: 357 LRERLRAATTAQASEALLTLVGAMLKDYQRRKRALGRMDYEDLILAARRLLAGDGAAAWV 416

Query: 377 ASVIREQFPVALIDEFQDTDPVQYSIFDSIYRIEENHLDSG---------LFLIGDPKQA 427
              +       L+DE QDT P Q++I  ++    E   DS          +F +GD KQ+
Sbjct: 417 LFKLDGGLDHLLVDEAQDTSPDQWAIASAL--AGEFFTDSARWDGTRPRTVFAVGDRKQS 474

Query: 428 IYAFRGADIYTYLRARQ------STTGRHHT---LGTNFRSSHAMVEAVNHVFQRAETGR 478
           IY F+GAD   +   R+      S  G H     L  +FRS+ A++EAVN VF R     
Sbjct: 475 IYGFQGADPKAFEDMRRHFHDAVSDIGGHFAEVPLNISFRSTRAVLEAVNAVFARQPARD 534

Query: 479 GAFLFREPNGENPVPFHSVLSQGRKEQLQVNGQTLPAMNLWHLPTDQPVSN---AVYRQQ 535
           G       +G      H    +     +++     PA  +   P   PV        R +
Sbjct: 535 GVAQDDADSGVAEDITHHAFRKDAGGLVELWPAMEPAPRVVGDPWKPPVERIGLESARAR 594

Query: 536 LAAACATHIVELLNGGQ----QGTAGFLRPDVSFTGVLPSDIAILV--RDGKEAQAVRTE 589
           LA   A  I  + +GG+    QG     RP      + P DI +LV  R G E + V   
Sbjct: 595 LAKRVAQRIKTMTSGGELLESQG-----RP------IRPGDILVLVRRRGGFEEELVSAL 643

Query: 590 LAAR----GVRSVYLSDKDSVFAAQEAHDLLAWLKACAEPDVERPLRAALACVTLNLSLP 645
            +A+    GV  + L+D+ +V       DL+A  KA   P+ +  L + L    + L   
Sbjct: 644 KSAKVEVAGVDRMTLTDQLAVM------DLIALGKALLLPEDDLTLASVLKGPLIGLDED 697

Query: 646 ELERL----NQDELAWESRVMQFRGYRAIWRTQGVLPMLR----RLL-HDFKLPQTLIAR 696
            L  L     +DE  W+          A  +   ++  LR    RL  H+F     L   
Sbjct: 698 ALFTLARDRGRDERLWDRLRPHAGAENAYGKAMEIIEPLRDRAGRLAPHEF-YAHVLDGP 756

Query: 697 SDGERVLTNLLHLSELLQQAASELDGEQA--LIRHLAEHLALSG-----QAGEEQILRLE 749
            +G R+L     L  L  +A   +D   A  L        AL G     + G  +I R +
Sbjct: 757 LNGRRLL-----LGRLGPEAEDPIDEFLALTLAHERVGPPALQGFLSWLEKGTVEIKR-D 810

Query: 750 SDE---QLVKVVTIHKSKGLEYDLVFLPFICSAKPVDGSRLPLHYHDEHGKSHVSL---- 802
            D+     V+++T+H SKGL+  +VFLP    AKP  G+ L L   D+     +      
Sbjct: 811 LDQGALDAVRIMTVHGSKGLQAPVVFLPDTL-AKPT-GNDLLLWTADKGVADALPFWCPS 868

Query: 803 -----RPTPELIAQADNERLAEDLRLLYVALTRAKHACWL-GIADLKR 844
                     +I     ER  E  RLLYVA+TRA    ++ G   LKR
Sbjct: 869 KADRGAAIEAMIDALKVERDREYRRLLYVAMTRAADRLYICGWETLKR 916



 Score = 47.8 bits (112), Expect = 6e-09
 Identities = 50/150 (33%), Positives = 68/150 (45%), Gaps = 21/150 (14%)

Query: 4   KPLALAFPLKGSQLIEASAGTGKTFTISALYLRLVLGHGGDEAGFGRELLPPQ-ILVVTF 62
           KP   A     S  + ASAGTGKT  ++   LRL+L      AG      PPQ +L +TF
Sbjct: 22  KPQRRAADPLASAWVAASAGTGKTKVLTDRVLRLLL------AG-----TPPQRLLCLTF 70

Query: 63  TDAATKELRERIRIRLAEAARFFREEIEQPDALIADLRAEYP--PEQWPACANRL-DIAA 119
           T AA  E+  R+   LA  A    E +      +A L    P   E   A + R   + A
Sbjct: 71  TKAAAAEMANRVSAVLAGWATLPEEALR---GRLASLLGSLPEGEEAIEALSGRARRLFA 127

Query: 120 QWMD---EAAVSTIHSWCQRMLREHAFDSG 146
           Q +D      + TIH +CQ +LR    ++G
Sbjct: 128 QVLDCPGGLRIQTIHGFCQTLLRRFPLEAG 157