Pairwise Alignments

Query, 1224 a.a., exodeoxyribonuclease V subunit beta from Pseudomonas fluorescens SBW25

Subject, 771 a.a., Probable ATP-dependent DNA helicase II UvrD1 from Mycobacterium tuberculosis H37Rv

 Score = 64.7 bits (156), Expect = 3e-14
 Identities = 74/266 (27%), Positives = 114/266 (42%), Gaps = 38/266 (14%)

Query: 222 LQERREALQTLKAPWQQWAAELRDICLQAVAAKTVDGRKMQARYFEPWFEKISAWAADET 281
           ++ER   L   KA +  W +     C++ +        + QA   E      S + AD++
Sbjct: 83  MRERVVGLVGEKARYM-WVSTFHSTCVRIL--------RNQAALIEGLNSNFSIYDADDS 133

Query: 282 LEQL-----DIGTGFTRLTPDGMAEAWKG------EPPQHPGIDAMAGLKAALDALPTPD 330
              L     D+G    R +P  +A A         +P Q     A+AGL        T D
Sbjct: 134 RRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQ-----ALAGL--------TED 180

Query: 331 AAVLQHAAGWVGKRFEDEKRRRAEMGFDDMLIRLNAALQADGGERLASVIREQFPVALID 390
           +  L  A   V   ++   R    + FDD++    A LQA    ++A   R +F   L+D
Sbjct: 181 SDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAF--PQIAQYYRRRFRHVLVD 238

Query: 391 EFQDTDPVQYSIF-DSIYRIEENHLDSG-LFLIGDPKQAIYAFRGADIYTYLR-ARQSTT 447
           E+QDT+  QY +  + + R   + +  G L ++GD  Q+IYAFRGA I       R    
Sbjct: 239 EYQDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPD 298

Query: 448 GRHHTLGTNFRSSHAMVEAVNHVFQR 473
            R   L  N+RS+  ++ A N V  R
Sbjct: 299 TRTILLEQNYRSTQNILSAANSVIAR 324



 Score = 38.9 bits (89), Expect = 2e-06
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 9/68 (13%)

Query: 17 LIEASAGTGKTFTISALYLRLVLGHGGDEAGFGRELLPPQILVVTFTDAATKELRERIRI 76
          LI A AG+GKT  ++     L+   G    G G      QIL +TFT+ A  E+RER+  
Sbjct: 39 LIVAGAGSGKTAVLTRRIAYLMAARG---VGVG------QILAITFTNKAAAEMRERVVG 89

Query: 77 RLAEAARF 84
           + E AR+
Sbjct: 90 LVGEKARY 97



 Score = 30.8 bits (68), Expect = 5e-04
 Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 35/166 (21%)

Query: 681 RRLLHDFKLPQTLIARSDGERVLTNLLHLSELLQQAASELDGEQ------ALIRHLAEHL 734
           RR L     PQ L AR D    L ++ H     ++ A+ L  +        ++    E +
Sbjct: 518 RRELEASTDPQEL-ARLDNLNELVSVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERV 576

Query: 735 ALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYDLVFLPFICSAKPVDGSRLPLHYHDE 794
           +L   A E      E    +V ++T+H +KGLE+ +VF+         DG          
Sbjct: 577 SLVADADEIP----EHGAGVVTLMTLHTAKGLEFPVVFV-----TGWEDGM--------- 618

Query: 795 HGKSHVSLRPTPELIAQADNERLAEDLRLLYVALTRAKHACWLGIA 840
                      P + A  +   L+E+ RL YV +TRA+   ++  A
Sbjct: 619 ----------FPHMRALDNPTELSEERRLAYVGITRARQRLYVSRA 654