Pairwise Alignments

Query, 569 a.a., single-stranded-DNA-specific exonuclease RecJ from Pseudomonas fluorescens SBW25

Subject, 571 a.a., single-stranded-DNA-specific exonuclease RecJ from Pseudomonas stutzeri RCH2

 Score =  943 bits (2437), Expect = 0.0
 Identities = 473/571 (82%), Positives = 516/571 (90%), Gaps = 2/571 (0%)

Query: 1   MRIDPRPLPAVLPFLGDLPPLLTRLYAARGVQSEAELDKSLARLIPYQRLKGIDAAVDLL 60
           MRI+PRPLP  LP LG+LPPLL RLYAARGV    ELDK LARLIPY++LKGIDAAV+LL
Sbjct: 1   MRIEPRPLPEQLPDLGELPPLLQRLYAARGVTCAEELDKGLARLIPYKQLKGIDAAVELL 60

Query: 61  VTALEQRQRILIVGDFDADGATASTVGTLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAV 120
           V ALE+RQRIL VGDFDADGATASTVG LGLR LGAAHVDYLVPNRFEYGYGLTPEIVAV
Sbjct: 61  VEALEKRQRILFVGDFDADGATASTVGVLGLRQLGAAHVDYLVPNRFEYGYGLTPEIVAV 120

Query: 121 ALQREPQLLITVDNGISSVEGVAAAKAAGLKVLVTDHHLPGDELPAADAIVNPNQPGCEF 180
           ALQREP LL+TVDNGISSV+GVAAAKAAGLKVLVTDHHLPG ELPAADAIVNPNQP C F
Sbjct: 121 ALQREPDLLVTVDNGISSVDGVAAAKAAGLKVLVTDHHLPGHELPAADAIVNPNQPECAF 180

Query: 181 PSKALAGVGVIFYVLMALRARLRSLGWYEHK--PQPNIGELLDLVALGSVADVVPLDANN 238
           PSK +AGVGVIFYVL+ALRARLR L W+  +   +PN+ ELLDLVALGSVADVVPLDANN
Sbjct: 181 PSKCIAGVGVIFYVLLALRARLRELDWFVRQGWAEPNLAELLDLVALGSVADVVPLDANN 240

Query: 239 RILVHQGLERIRAGRARPGIKAILEVAKRDAARITSTDLGFILGPRLNAAGRLDDMSLGI 298
           RILVHQGL RIRAGRAR G++AILEVA RD  RITSTDLGFILGPRLNAAGRLDDMSLGI
Sbjct: 241 RILVHQGLARIRAGRARAGLRAILEVAGRDHRRITSTDLGFILGPRLNAAGRLDDMSLGI 300

Query: 299 ECLLTTDVAAAREMAAQLDGMNQDRKSIEQGMQREALAQLKDLPVESMPYGLCLFDPEWH 358
           ECLL  D A AR+MA QLD +N+DRKSIEQGMQREALAQLKDLP+E +P+GLCLF+ +WH
Sbjct: 301 ECLLCEDEALARDMAVQLDELNKDRKSIEQGMQREALAQLKDLPLEDLPFGLCLFEADWH 360

Query: 359 QGVIGILASRMKERYFRPTIAFADAGDGLLKGSGRSVPGFHIRDALAVVASQHPHLIAKY 418
           QGVIGILASR+KERY RPTIAFADAGDGLLKGS RSVPGFHIRDAL  VA++HP LI+K+
Sbjct: 361 QGVIGILASRLKERYHRPTIAFADAGDGLLKGSARSVPGFHIRDALDAVAAKHPGLISKF 420

Query: 419 GGHAMAAGLTLPEENFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALR 478
           GGHAMAAGL+LP+ NF  FA AFDAEVRRQL EEDLTGRLL+DG L+VEEFHLELARALR
Sbjct: 421 GGHAMAAGLSLPQANFGAFAAAFDAEVRRQLCEEDLTGRLLTDGQLSVEEFHLELARALR 480

Query: 479 HAGPWGQHFPEPLFHGVFQLVEQRVVGERHLKVVLKSECGSVKLDGIAFGVDREVWPNPT 538
           +AGPWGQHFPEP+FHGVFQLV+QR+VGERHLK+VLKSECGS+ LDGIAF VDRE+WPNPT
Sbjct: 481 NAGPWGQHFPEPMFHGVFQLVQQRIVGERHLKLVLKSECGSLTLDGIAFNVDREIWPNPT 540

Query: 539 VRWVELAYKLDVNEFRGNETVQLMIAHIEPR 569
           VRW ELAYKLDVNE+RG E+VQLM+AHI PR
Sbjct: 541 VRWAELAYKLDVNEYRGQESVQLMVAHIAPR 571