Pairwise Alignments

Query, 569 a.a., single-stranded-DNA-specific exonuclease RecJ from Pseudomonas fluorescens SBW25

Subject, 600 a.a., single-stranded-DNA-specific exonuclease from Sinorhizobium meliloti 1021

 Score =  261 bits (666), Expect = 7e-74
 Identities = 190/514 (36%), Positives = 272/514 (52%), Gaps = 15/514 (2%)

Query: 21  LLTRLYAARGV---QSEAELDKSLARLIPY-QRLKGIDAAVDLLVTALEQRQRILIVGDF 76
           L+ R+ A RGV    + A L+ +L  L+P    L     A + L  A+ +R++++I GD+
Sbjct: 48  LIARVLAGRGVGLDDAAAFLEPTLRALMPDPDTLTDGRKAAERLADAIRRREKVVIFGDY 107

Query: 77  DADGATASTVGTLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAVALQREPQLLITVDNGI 136
           D DGA +S +    LR        Y +P+R   GYG  P+ +   + R  +L++TVD G 
Sbjct: 108 DVDGAASSALMARFLRHFDITAEIY-IPDRIFEGYGPNPQAIDQLIDRGSELIVTVDCGS 166

Query: 137 SSVEGVAAAKAAGLKVLVTDHHLPGDELPAADAIVNPNQPGCEFPSKALAGVGVIFYVLM 196
           +S E +A A      V+V DHH  G  LP   A+VNPN+         L   GV++ VL+
Sbjct: 167 TSHEALAVAAERRTDVVVIDHHQVGSVLPPCHALVNPNREDDLSGQGHLCAAGVVYLVLV 226

Query: 197 ALRARLRSLGWYEHKPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAGRARP 256
                LR  G        ++  LLDLVAL +V DVVPL   NR  V +GL   R      
Sbjct: 227 NTLRVLRLRG-DPRAASFDLLSLLDLVALATVCDVVPLKGLNRAYVVKGLLAARH-MGNA 284

Query: 257 GIKAILEVAKRDAARITSTDLGFILGPRLNAAGRLDDMSLGIECLLTTDVAAARE-MAAQ 315
           G+ A+L  A      +T   LGF+LGPR+NA GR+ D +LG   LLT DVAAA E +A+Q
Sbjct: 285 GLAALLRKAAIGGP-VTPYHLGFLLGPRINAGGRIGDAALGSR-LLTLDVAAAAEAIASQ 342

Query: 316 LDGMNQDRKSIEQGMQREALAQ-LKDLPVESMPYGLCLFDPEWHQGVIGILASRMKERYF 374
           LD +N+DR+++E  M  EA A+ L +         +      WH G++G++A+R+KE++ 
Sbjct: 343 LDELNRDRQAMEAAMLAEAEAEVLAEYGTGEGASVIVTARQNWHPGIVGLIAARIKEKFR 402

Query: 375 RPTIAFADAGDGLLKGSGRSVPGFHIRDALAVVASQHPHLIAKYGGHAMAAGLTLPEENF 434
           RP  A A   +G   GSGRS+ GF +     V A+    L+ K GGHAMAAGLT+     
Sbjct: 403 RPAFAIAFDPNGRGTGSGRSINGFDM--GRLVRAAVDNGLLVKGGGHAMAAGLTVERGKL 460

Query: 435 PLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHAGPWGQHFPEPLF-H 493
               + F+      +R+      L  DG LA     L+L   L  AGP+G   P+PLF  
Sbjct: 461 GQLRQFFEERAETAIRDLVAVQTLKVDGALAAAGATLDLVDLLDQAGPYGSGHPQPLFAF 520

Query: 494 GVFQLVEQRVVGERHLKVVLKSECGSVKLDGIAF 527
              +L + R VG  H+KV L+ + GS +++GIAF
Sbjct: 521 PQHRLRDSRQVGANHVKVTLEGQDGS-RMEGIAF 553