Pairwise Alignments

Query, 569 a.a., single-stranded-DNA-specific exonuclease RecJ from Pseudomonas fluorescens SBW25

Subject, 606 a.a., RecJ exonuclease (NCBI) from Rhodospirillum rubrum S1H

 Score =  304 bits (779), Expect = 6e-87
 Identities = 219/577 (37%), Positives = 310/577 (53%), Gaps = 22/577 (3%)

Query: 4   DPRPLPAVLPFLGDLPPLLTRLYAARGVQSEAE---LDKSLARLIPYQ-RLKGIDAAVDL 59
           D R   A+   LG +P ++ R+   RGVQ E     L  +L  L+P    L  +D AV  
Sbjct: 38  DERQALAISQRLG-VPEVVGRVLTGRGVQVEEADGFLTPTLRALLPDPGHLLDMDKAVAR 96

Query: 60  LVTALEQRQRILIVGDFDADGATASTVGTLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVA 119
           L  A+  ++ I I GD+D DGAT++ +     R LGA  + + +P+R   GYG     + 
Sbjct: 97  LSKAVRDKETIAIFGDYDVDGATSTALMHRFFRSLGARVLIH-IPDRVLEGYGPNAPALE 155

Query: 120 VALQREPQLLITVDNGISSVEGVAAAKAAGLKVLVTDHHLPGDELPAADAIVNPNQPGCE 179
               +  ++++TVD GIS+ + + AAKAAGL V+V DHH    ELPAA A+VNP +    
Sbjct: 156 ALAAKGARVVLTVDCGISAFDALRAAKAAGLDVVVCDHHEARTELPAAVAVVNPKRLDEA 215

Query: 180 FPSKALAGVGVIFYVLMALRARLRSLGWY--EHKPQPNIGELLDLVALGSVADVVPLDAN 237
            P   LA VGV F + +A+   LR  GW+  E +P P++  LLDLVALG+V D+VPL   
Sbjct: 216 SPHTHLAAVGVAFLMAVAINRDLRDSGWFAAEQRPPPDLMALLDLVALGTVCDMVPLIGV 275

Query: 238 NRILVHQGLERIRAGRARPGIKAILEVA-KRDAARITSTDLGFILGPRLNAAGRLDDMSL 296
           NR LV QGL ++ A R  PGI A+ EV+  RD  R+ +  LGF+LGPR+NA GR+    +
Sbjct: 276 NRALVQQGL-KVIAKRTNPGIAALAEVSGVRD--RVDAFHLGFMLGPRVNAGGRVGQAGM 332

Query: 297 GIECLLTTDVAAAREMAAQLDGMNQDRKSIEQGMQREALAQLKDLPVESMPYGLCLFDPE 356
           G   L + D     + A QLD  N  RK IE  +  +A+ Q++  P   +P  +     +
Sbjct: 333 GAALLSSEDPLECLDFARQLDAFNGARKEIEAAVLHQAIEQVEAAPANDLPL-VFASGTD 391

Query: 357 WHQGVIGILASRMKERYFRPTIAFADAGDGLLKGSGRSVPGFHIRDALAVVASQHPHLIA 416
           WH GV+GI+ASR+KERY  P  A A  G GL KGSGRSV G  +     V+A++   ++ 
Sbjct: 392 WHPGVVGIVASRLKERYGLPACAVALDG-GLAKGSGRSVGGVDL--GRVVIAAREAGVLE 448

Query: 417 KYGGHAMAAGLTLPEENFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARA 476
             GGHAMAAG +L  +    F +     ++ Q+    L   L  DG L V   + +L RA
Sbjct: 449 AGGGHAMAAGFSLRTDRLEEFRQFLGERLKDQVAALALVASLDLDGVLDVRGANAQLVRA 508

Query: 477 LRHAGPWGQHFPEPLFHGVFQLV-EQRVVGERHLKVVLKSECGSVKLDGIAF-GVDREVW 534
           L  AGP+G   PEP F      V +  VVG  H++  L    G   L  +AF   D E+ 
Sbjct: 509 LSQAGPYGSGNPEPRFAVANARVGKVDVVGMGHVRCFLNGPSGG-SLKAMAFKAADSEIG 567

Query: 535 PNPTVRW---VELAYKLDVNEFRGNETVQLMIAHIEP 568
                     + +A  L ++ F+G ETV L++  + P
Sbjct: 568 HALLTAHGASLHVAGTLRLDSFQGRETVVLVVDDVAP 604