Pairwise Alignments

Query, 569 a.a., single-stranded-DNA-specific exonuclease RecJ from Pseudomonas fluorescens SBW25

Subject, 574 a.a., single-stranded-DNA-specific exonuclease RecJ (RefSeq) from Shewanella loihica PV-4

 Score =  669 bits (1726), Expect = 0.0
 Identities = 327/572 (57%), Positives = 442/572 (77%), Gaps = 11/572 (1%)

Query: 2   RIDPRPLPAVLPFLGDLPPLLTRLYAARGVQSEAELDKSLARLIPYQRLKGIDAAVDLLV 61
           ++D   LP+       L P+L ++YA+RG   + + + +LA L+    LK +D A  ++ 
Sbjct: 10  KVDDSHLPS------HLSPILKQVYASRGCTVD-DCELALANLLRPNTLKDVDKAAAIIA 62

Query: 62  TALEQRQRILIVGDFDADGATASTVGTLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAVA 121
            A+ ++Q ILI+GDFDADGAT+++V  L LR++GA +VDYL+PNRF+YGYGL+PEIV VA
Sbjct: 63  DAMAKQQSILIIGDFDADGATSTSVCLLALRMMGAINVDYLIPNRFDYGYGLSPEIVQVA 122

Query: 122 LQREPQLLITVDNGISSVEGVAAAKAAGLKVLVTDHHLPGDELPAADAIVNPNQPGCEFP 181
            Q+  +LLITVDNGISS+EGVAAAKA G++V++TDHHLPG+ +P ADAIVNPNQ GC F 
Sbjct: 123 QQKGAELLITVDNGISSIEGVAAAKALGMQVVITDHHLPGNSVPEADAIVNPNQLGCGFA 182

Query: 182 SKALAGVGVIFYVLMALRARLRSLGWYEHK--PQPNIGELLDLVALGSVADVVPLDANNR 239
           SKA+AGVGV FY++ ALRA LRS GWY+ +   +PN+  LLD+VALG+VADVV LD NNR
Sbjct: 183 SKAIAGVGVAFYLMSALRAELRSRGWYQAQGIQEPNLATLLDIVALGTVADVVSLDTNNR 242

Query: 240 ILVHQGLERIRAGRARPGIKAILEVAKRDAARITSTDLGFILGPRLNAAGRLDDMSLGIE 299
           ILV  GL+R+RAGR RPGI A+LEVAKR+ +RI ++D GF +GPRLNAAGRLD+M+LG+E
Sbjct: 243 ILVDAGLKRVRAGRCRPGITALLEVAKRNTSRIVASDFGFAVGPRLNAAGRLDEMALGVE 302

Query: 300 CLLTTDVAAAREMAAQLDGMNQDRKSIEQGMQREALAQLKDLPVES--MPYGLCLFDPEW 357
            LL  D+  AR MA++LDG+N +R+ +E GMQ+EAL  L+ L +    +P+G+ L+  +W
Sbjct: 303 TLLCDDMMRARRMASELDGLNAERRELETGMQQEALKSLESLSLNEAELPWGIALYQQDW 362

Query: 358 HQGVIGILASRMKERYFRPTIAFADAGDGLLKGSGRSVPGFHIRDALAVVASQHPHLIAK 417
           HQGVIGILASR+K++Y RP IAFA+AG+G +KGS RS+ G H+RD L ++ ++HP +I K
Sbjct: 363 HQGVIGILASRIKDKYHRPVIAFAEAGEGEIKGSARSIKGLHMRDLLELINARHPGMIIK 422

Query: 418 YGGHAMAAGLTLPEENFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARAL 477
           +GGHAMAAGL+L    F  FA+A+D  VR  L  E LTG ++SDG L+  + ++ LAR L
Sbjct: 423 FGGHAMAAGLSLRAGEFERFAKAYDEAVRELLAPEQLTGEIVSDGELSPAQLNMALAREL 482

Query: 478 RHAGPWGQHFPEPLFHGVFQLVEQRVVGERHLKVVLKSECGSVKLDGIAFGVDREVWPNP 537
           R AGPWGQ+FPEP+F GVF++++QR+VGERHLK+VL+SECG   +D IAF VD   WP+ 
Sbjct: 483 RSAGPWGQNFPEPIFDGVFRILQQRIVGERHLKLVLESECGQTMVDAIAFNVDLTTWPDA 542

Query: 538 TVRWVELAYKLDVNEFRGNETVQLMIAHIEPR 569
           T+++ E+AYKLD+NEFRGNE++QLM+  IEP+
Sbjct: 543 TIQYAEVAYKLDINEFRGNESLQLMVEQIEPK 574