Pairwise Alignments

Query, 569 a.a., single-stranded-DNA-specific exonuclease RecJ from Pseudomonas fluorescens SBW25

Subject, 574 a.a., single-stranded-DNA-specific exonuclease RecJ (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  677 bits (1746), Expect = 0.0
 Identities = 339/556 (60%), Positives = 434/556 (78%), Gaps = 7/556 (1%)

Query: 18  LPPLLTRLYAARGV-QSEAELDKSLARLIPYQRLKGIDAAVDLLVTALEQRQRILIVGDF 76
           LPPLL +LYA RGV  SE EL   L  L+    +KG+D A  L+  A++  + ILIVGDF
Sbjct: 20  LPPLLRQLYARRGVLPSECEL--VLKGLLRPDTMKGLDLAAKLIADAMQLDKSILIVGDF 77

Query: 77  DADGATASTVGTLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAVALQREPQLLITVDNGI 136
           DADGAT+++V  L LR++GA+ VDYL+PNRF+YGYGL+PEIVAVA  ++ QLLITVDNGI
Sbjct: 78  DADGATSTSVCILALRMMGASKVDYLIPNRFDYGYGLSPEIVAVAASKQAQLLITVDNGI 137

Query: 137 SSVEGVAAAKAAGLKVLVTDHHLPGDELPAADAIVNPNQPGCEFPSKALAGVGVIFYVLM 196
           SS+EGVAAAKA G++V++TDHHLPG ELP ADAIVNPNQPGC+F SK++AGVGV FY++ 
Sbjct: 138 SSIEGVAAAKAFGMQVVITDHHLPGHELPKADAIVNPNQPGCQFASKSIAGVGVAFYLMT 197

Query: 197 ALRARLRSLGWYEHK--PQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAGRA 254
           ALRA LR+  WY+ +   +PN+G LLD+VALG+VADVV LD NNRILV  GL+R+R+GR 
Sbjct: 198 ALRAELRARNWYQARGIAEPNLGTLLDIVALGTVADVVSLDTNNRILVEAGLQRVRSGRC 257

Query: 255 RPGIKAILEVAKRDAARITSTDLGFILGPRLNAAGRLDDMSLGIECLLTTDVAAAREMAA 314
           R GI A+LEVAKR+ ARI ++D GF +GPRLNAAGRLD+M+LG+E LL  D+  AR MAA
Sbjct: 258 RVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDMMYARRMAA 317

Query: 315 QLDGMNQDRKSIEQGMQREALAQLKDLPV--ESMPYGLCLFDPEWHQGVIGILASRMKER 372
           +LD +NQ+R+ +E GMQ+EAL  L+ L +  E +P+G+ LF  +WHQGVIGILASR+K++
Sbjct: 318 ELDSLNQERRELEVGMQQEALKSLEYLKLNEEQLPWGIALFQEDWHQGVIGILASRIKDK 377

Query: 373 YFRPTIAFADAGDGLLKGSGRSVPGFHIRDALAVVASQHPHLIAKYGGHAMAAGLTLPEE 432
           Y RP IAFADAG+G +KGS RS+ G H+RD L +V S+HP LI+K+GGHAMAAGLTL   
Sbjct: 378 YHRPVIAFADAGNGEIKGSARSIKGLHMRDLLELVNSRHPGLISKFGGHAMAAGLTLKSG 437

Query: 433 NFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHAGPWGQHFPEPLF 492
            F  FA+A+D  VR QL+ E LTG L SDG L   E  LE+A+ LR+AGPWGQ F EPLF
Sbjct: 438 GFATFAKAYDDAVREQLKPEQLTGELWSDGELTPTELTLEIAQLLRNAGPWGQSFEEPLF 497

Query: 493 HGVFQLVEQRVVGERHLKVVLKSECGSVKLDGIAFGVDREVWPNPTVRWVELAYKLDVNE 552
            G F++++QR+VG+RHLK+VL+++CG+V LD IAF V    WP+ T++   + YKLDVNE
Sbjct: 498 DGYFKIIQQRIVGDRHLKLVLETQCGTVMLDAIAFNVALHTWPDATIQHARIVYKLDVNE 557

Query: 553 FRGNETVQLMIAHIEP 568
           +RGN T+QLM+  IEP
Sbjct: 558 YRGNFTLQLMVEQIEP 573