Pairwise Alignments

Query, 569 a.a., single-stranded-DNA-specific exonuclease RecJ from Pseudomonas fluorescens SBW25

Subject, 571 a.a., single-stranded-DNA-specific exonuclease RecJ (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  262 bits (669), Expect = 3e-74
 Identities = 197/557 (35%), Positives = 277/557 (49%), Gaps = 24/557 (4%)

Query: 21  LLTRLYAARGVQSEAELD----KSLARLIPYQRLKGIDAAVDLLVTALEQRQRILIVGDF 76
           LL RL   RG+ S  ++D      L  L P +   G+  A  ++   +       + GD+
Sbjct: 29  LLLRLLLRRGLSSVQDMDVYLSPQLRHLAPLEEWPGLAEAAGVITAGITAGMPFAVWGDY 88

Query: 77  DADGATASTVGTLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAVALQREPQLLITVDNGI 136
           D DG T++ +    L   G   V + +P+R   GYGL  E +        +LL+TVD GI
Sbjct: 89  DVDGVTSTALVHDVLEFHGV-DVRHHLPDRRAEGYGLNVEWIERLAADGVRLLLTVDCGI 147

Query: 137 SSVEGVAAAKAAGLKVLVTDHHLPGDELPAADAIVNPNQPGCEFPSKALAGVGVIFYVLM 196
           S V  ++ A+  G+ V+V+DHHLP + LP A AI NP    C  P  ALAGVGV F+V+ 
Sbjct: 148 SDVVPISRARELGMTVVVSDHHLPPEVLPPAHAICNPRLACC--PCPALAGVGVAFFVMA 205

Query: 197 ALRARLRSLGWYEHKPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAGRARP 256
           A+ A L       +    ++ E+LDLVALG++ADVV L   NRILV  GL +I   R RP
Sbjct: 206 AVNAALGERSGRRY----DMREVLDLVALGTLADVVDLGGQNRILVKNGLLKIAEAR-RP 260

Query: 257 GIKAILEVA-KRDAARITSTDLGFILGPRLNAAGRLDDMSLGIECLLTTDVAAAREMAAQ 315
           G+ A+  VA    +A + +  + F L PR+NAAGRL +  + ++ L       A ++A +
Sbjct: 261 GMAALKAVAGYNPSASLGAGQVVFGLAPRINAAGRLGEAEMALQLLRARKHGEAAQLAQR 320

Query: 316 LDGMNQDRKSIEQGMQREALAQLKDLPVESMPYGLCLFDPEWHQGVIGILASRMKERYFR 375
           LD MN DR+  E  +  EA  Q +      M  G  L   +WH GVIGI+ASR+ E Y+R
Sbjct: 321 LDAMNTDRRVEEDRILEEAKRQAESQAASRM--GFVLHGEDWHPGVIGIVASRIVEAYYR 378

Query: 376 PTIAFADAGDGLLKGSGRSVPGFHIRDALAVVASQHPHLIAKYGGHAMAAGLTLPEENFP 435
           PT+     G+  LKGSGRSV  F +   L    SQ   L   +GGH  AAG++L      
Sbjct: 379 PTLILCTEGE-TLKGSGRSVSEFDLHAGL----SQCADLFLGFGGHRQAAGMSLKTSALD 433

Query: 436 LFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEE-FHLELARALRHAGPWGQHFPEPLFHG 494
              E FD  VR+ L +  LT  L  DG L  E      + + L    P+G    EP+F  
Sbjct: 434 ALRERFDTVVRQALGDTPLTASLKLDGDLGFEHASDFTVLKELEMLQPFGTGNAEPVFAS 493

Query: 495 VFQLVE-QRVVGE--RHLKVVLKSECGSVKLDGIAFGVDREVWPNPTVRWVELAYKLDVN 551
              LV   R  G+   H+++ L  E   V L   A+    E         + LAY   ++
Sbjct: 494 PPLLVRGLRRFGKAREHVELELTDESCGVTLHAKAWRQSGEFSDRLRGTRIRLAYTPRID 553

Query: 552 EFRGNETVQLMIAHIEP 568
            + G  +V L I   +P
Sbjct: 554 RYSGAASVDLRIRDWQP 570