Pairwise Alignments

Query, 450 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas fluorescens SBW25

Subject, 449 a.a., RNA methyltransferase, TrmA family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  310 bits (795), Expect = 5e-89
 Identities = 174/431 (40%), Positives = 259/431 (60%), Gaps = 10/431 (2%)

Query: 26  KQRLTIERLANDGRGIVFFEGRTWFVNGALAGEDVEARVLGTHGKIVEARTERVFKSSEL 85
           KQ  ++++L + G GI   +G+  F+ GAL  E V+A++         A+  +V   S  
Sbjct: 18  KQSFSVQQLDHLGAGIAQHQGKVVFIPGALPNETVQAQLTEQKKNYARAKLIKVETPSTE 77

Query: 86  RRPAPCAHFGRCGGCSVQHLPHAEQLALKQRMLAEQLSRVAGVEPQEWAAPLSGPEFGYR 145
           R    C H+  CGGC +QH+    Q   K   L + +++ AG E    A  LSG  + YR
Sbjct: 78  RVSPLCPHYHTCGGCDLQHMSLTAQREHKSAALVDIMAKFAGAEGS-LAPALSGEGWHYR 136

Query: 146 RRARVAVRWDAKAKHLAVGFRAVASQDIVAIDDCPVLVQALQPIMQRLPNMLRRLSKPQA 205
           RRAR+A  +D   K L++GFRA +S  +V+I +C VL + L  ++     +L +L+   +
Sbjct: 137 RRARLATLFDKNTKQLSLGFRASSSSHVVSITECLVLAKPLSDLIAPFAKLLNQLAAKSS 196

Query: 206 LGHVEVFSGTS-IAVLLRHMAPLSEADLHILKEFCTFHDAQLWLH-GEGQPEPVDADAVL 263
           LGH+E+ +  +    ++R    L++ D+  L +F   H   + L   EG+   V+   +L
Sbjct: 197 LGHLELIAADNGHFAVIRITKSLNDKDMAKLAQFAEQHQIHICLQDNEGEFHGVNGTLLL 256

Query: 264 GF------RLEQWDLELAYRPGDFVQVNAGVNAAMVAQALEWLAPQPDERVLDLFCGLGN 317
                   + +   + L + PG+FVQVNA +N AMVAQAL+WLAPQP ER+LDLFCG+GN
Sbjct: 257 PVYQLLDDKTDVQPVSLTFTPGNFVQVNAQINKAMVAQALDWLAPQPGERILDLFCGMGN 316

Query: 318 FALPLARQVREVVAVEGVQTMVDRAAVNAVSNNLHNAQFFQADLSQPLTDAEWAKQGFSA 377
           F+LPLAR   +V+ VEGV  MV +A  NAV+N L N  F+  DLS  L+   W  +    
Sbjct: 317 FSLPLARMGADVIGVEGVPEMVSQARENAVANGLSNLTFYHGDLSADLSSEPWMGK-IDK 375

Query: 378 VLLDPPRDGALEVVRKLATLKAKRLVYVSCNPATLARDTVELVKQGYRLKRAGILDMFPQ 437
           +LLDP R GA E ++ L  +K +++VYVSCNPA+LARD+  L+++GY+L++ G++DMFPQ
Sbjct: 376 LLLDPARAGAYESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLIDMFPQ 435

Query: 438 TAHVEAMALFE 448
           T H+EAMALFE
Sbjct: 436 THHIEAMALFE 446