Pairwise Alignments

Query, 708 a.a., DNA helicase RecQ from Pseudomonas fluorescens SBW25

Subject, 607 a.a., ATP-dependent DNA helicase RecQ (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  564 bits (1454), Expect = e-165
 Identities = 291/585 (49%), Positives = 399/585 (68%), Gaps = 3/585 (0%)

Query: 9   LKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRNGLAVVVSPLIA 68
           L  +FGY  FR  Q  +IERV  G D LV+MPTGGGKSLC+Q+PAL+ +G+ +VVSPLI+
Sbjct: 17  LAQVFGYRDFRDGQREVIERVCRGEDCLVIMPTGGGKSLCYQLPALMMHGITIVVSPLIS 76

Query: 69  LMDDQVATLEELGVAAASLNSTLSAEQQRDLAARIKRGEVKMLYLAPERLVQPRMLAFLQ 128
           LM DQV +L + GV AA LNS+   E   ++  ++  GE+K+LY++PERL+    +  +Q
Sbjct: 77  LMKDQVDSLLQTGVNAAYLNSSQPRELSLEVLRQLHLGELKLLYVSPERLLTADFIERMQ 136

Query: 129 SLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFPDVPRIALTATADKRTREEIVERL 188
           SL +++FAIDEAHC+SQWGHDFR EY  LGQL +LFP VP +ALTATAD+ TR+ I ERL
Sbjct: 137 SLPLSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPHVPMMALTATADQATRQNICERL 196

Query: 189 HLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLSERRSDAGIVYCLSRKKVDEVAAFL 248
            + N  + LSSFDRPNI Y +  K     QL  FL ++   +GI+YC SR++VDEVA  L
Sbjct: 197 GI-NPFKLLSSFDRPNIRYTVAEKLNAANQLRQFLLQQNGSSGIIYCSSRRRVDEVAERL 255

Query: 249 CEQGYPALPYHAGLPNETRSAHQKRFLNEEGLIMVATIAFGMGIDKSNVRFVAHMDLPKS 308
             QG+ A  YHAG+  E R   Q  FL ++  I+VAT+AFGMGI+KSNVRFV H D+PKS
Sbjct: 256 TLQGFHAKAYHAGMTPEERGEVQDSFLKDQIDIVVATVAFGMGINKSNVRFVVHYDIPKS 315

Query: 309 LEAYYQETGRAGRDGLPADAWMVYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSLC 368
           +EAYYQETGRAGRDGL A+A+M++   D+  ++ +++ SE   + +++E HKL+ M +  
Sbjct: 316 IEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLIEQSEPGPQ-QQVEFHKLNTMAAFA 374

Query: 369 EETRCRRQTLLAYFDEDMPQPCGHCDNCVDGVQTWDATEPARQGLSAIYRTGQRYGVGHL 428
           E   CRRQ LL YFDE   +PCG+CD C+D  + ++ +E A++ LS IYR GQR+G+ HL
Sbjct: 375 EAQTCRRQVLLHYFDESALEPCGNCDICLDPPKRYNGSEDAQKVLSCIYRLGQRFGINHL 434

Query: 429 VDVLLGKDNEKVRSFGHEKLSVYGVGKARAEGEWRSLFRQMVARGLVDIDIEGYGGLRLN 488
           ++VL G     +   GH+KLS +G+GK ++   W S+ RQ++  GL   DI     + LN
Sbjct: 435 IEVLRGSKGAAIVDRGHDKLSTWGIGKDKSHEYWLSVIRQLIHLGLASQDITRGSSITLN 494

Query: 489 DSCRPLLKGEVSLELRRDLKPQTTAKSSTSQASQLVRGEEREQWEALRTLRRKLAQEHSV 548
            S RP+LKGEV+L L       T+ K  T+Q S++    +R+ +  L+TLRR++A+E  V
Sbjct: 495 PSARPILKGEVALMLAEPRIQLTSIKRKTTQ-SRVPLNYDRKLFARLKTLRREIAEEQDV 553

Query: 549 PPYVIFPDSTLLEMLREQPTSMAEMARVSGVGARKLERYGQAFLE 593
           PPY++F D+TL EM    PTS  EM  V+GVG RKL R+G  FL+
Sbjct: 554 PPYLVFNDATLAEMAAMMPTSPGEMLAVNGVGERKLSRFGGEFLD 598