Pairwise Alignments

Query, 671 a.a., excinuclease ABC subunit B from Pseudomonas fluorescens SBW25

Subject, 733 a.a., Excinuclease ABC, B subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  766 bits (1977), Expect = 0.0
 Identities = 389/664 (58%), Positives = 495/664 (74%), Gaps = 11/664 (1%)

Query: 2   SDFQLVTRFEPAGDQPEAIRQMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQINRPTLV 61
           ++F+L + ++PAGDQP+AI +++ G+ A    Q LLGVTGSGKTF++A VIA++ RPTL+
Sbjct: 36  AEFRLASDYQPAGDQPQAIAELLRGLAAQDRDQVLLGVTGSGKTFTMAQVIAEMGRPTLI 95

Query: 62  LAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQM 121
           LAPNKTLAAQLYGEFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEKD+SIN+ I++M
Sbjct: 96  LAPNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRM 155

Query: 122 RLSATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRELLRRLTSLQYT 181
           R +AT+ALLER+D IIV +VSCIYG+GS E+Y +M++ +  G  L + +LL+ L  LQ+T
Sbjct: 156 RHAATRALLERRDVIIVASVSCIYGIGSVESYSRMIIPIKVGTTLPRADLLKALVELQFT 215

Query: 182 RNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFT 241
           RND+ F R  FRVRGD ++I+PA  +  A R+ L+ DE+ES+  FDPLTGE+   L   T
Sbjct: 216 RNDIAFTRGMFRVRGDSVEIFPAHYEDRAWRVSLWGDEIESVREFDPLTGEITASLDEVT 275

Query: 242 FYPKSHYVTPRETLMGAIEGIKVELAERLEYLRSNNKLVEAQRLEQRTRFDLEMILELGY 301
            YP SH+VTPR  L  A+  IK EL E L       K++EAQRLEQRT FDLEMI   G+
Sbjct: 276 VYPASHHVTPRPALSQAVRTIKAELKETLARFYDQGKVLEAQRLEQRTTFDLEMIEATGH 335

Query: 302 CNGIENYSRYLSGRESGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLV 361
           C  IENYSR+L+GR  G PPPTL++YLP DALL +DESHV+VPQ+G M++GD +RK  L 
Sbjct: 336 CKSIENYSRHLTGRRPGDPPPTLFEYLPEDALLFVDESHVAVPQIGGMFRGDFNRKSVLA 395

Query: 362 EYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHAGRVI-EQLVRPTGLVDPE 420
           E+GFRLPS +DNRP++F+EW+ + P +IFVSATPG +E E  G V+ EQ++RPTGLVDP 
Sbjct: 396 EFGFRLPSCVDNRPLKFEEWDVMRPPSIFVSATPGRWELERTGGVVAEQVIRPTGLVDPV 455

Query: 421 IEIRPALTQVDDLLSEITKRVALEERVLVTTLTKRMSEDLTDYLADHGVRVRYLHSDIDT 480
             IRP   QVDDLL E+    A  ERVLVTTLTKRMSEDLT+YL + GVRVRY+HSDI+T
Sbjct: 456 CIIRPVEAQVDDLLGEVKACAARGERVLVTTLTKRMSEDLTEYLTEQGVRVRYMHSDIET 515

Query: 481 VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 540
           +ER+EIIRDLRLG FDVLVGINLLREGLD+PE +LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 516 LERIEIIRDLRLGAFDVLVGINLLREGLDIPECALVAILDADKEGFLRSRTSLIQTIGRA 575

Query: 541 ARNLNGRAILYADRITGSMERAIGETQRRRDKQIAFNLENGITPKGVFKDVADIMEGATV 600
           ARN+ GR ILYAD++T S+  AI ET RRR +Q  +N  +GITP+ V   ++D++     
Sbjct: 576 ARNVGGRVILYADKMTDSLTFAIEETSRRRQRQQDYNAAHGITPETVRSRISDVL----- 630

Query: 601 PGSRSKKRKGMAKAAEESAKYENELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQTRDE 660
               S   +            +N+L   S + + +  L+++M   A DLEFE A + RDE
Sbjct: 631 ----SSVYEKDYVTVTTGVSGDNQLVGKS-LREHLADLDKRMRAAAADLEFEEAGRLRDE 685

Query: 661 IGKL 664
           I +L
Sbjct: 686 IRRL 689