Pairwise Alignments

Query, 671 a.a., excinuclease ABC subunit B from Pseudomonas fluorescens SBW25

Subject, 672 a.a., excinuclease ABC subunit B (RefSeq) from Shewanella loihica PV-4

 Score =  936 bits (2419), Expect = 0.0
 Identities = 463/669 (69%), Positives = 560/669 (83%), Gaps = 3/669 (0%)

Query: 2   SDFQLVTRFEPAGDQPEAIRQMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQINRPTLV 61
           S F LV+++ PAGDQP AI+Q+V+G++AGLA+QTLLGVTGSGKTF+IANVI Q+ RPT++
Sbjct: 4   SAFDLVSQYAPAGDQPGAIKQLVDGLDAGLANQTLLGVTGSGKTFTIANVIKQMQRPTII 63

Query: 62  LAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQM 121
           +APNKTLAAQLYGE K FFPNNAVEYFVSYYDYYQPEAYVPS++TFIEKDAS+N HIEQM
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSTNTFIEKDASVNAHIEQM 123

Query: 122 RLSATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRELLRRLTSLQYT 181
           RLSATKALLER+D +++ +VS IYGLG PE+Y+KM+LH+ +GD + QRE+L+RL+ LQYT
Sbjct: 124 RLSATKALLERRDVVLIASVSAIYGLGDPESYMKMLLHLRQGDFMGQREILQRLSELQYT 183

Query: 182 RNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFT 241
           RND++  R TFRVRG+VIDI+PAESD +AIR+ELFDDE++ LS FDPLTG +++++ R T
Sbjct: 184 RNDIELDRGTFRVRGEVIDIFPAESDKQAIRVELFDDEIDRLSLFDPLTGHILQRIARTT 243

Query: 242 FYPKSHYVTPRETLMGAIEGIKVELAERLEYLRSNNKLVEAQRLEQRTRFDLEMILELGY 301
            YPK+HYVTPRE ++ A E IK EL ER +YL  NNKL+EAQR+ +R ++D+EM+ ELGY
Sbjct: 244 VYPKTHYVTPREKILAATEDIKQELRERKQYLLDNNKLIEAQRISERVQYDIEMMTELGY 303

Query: 302 CNGIENYSRYLSGRESGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLV 361
           C+GIENYSRYLSGR  G  PPTL DYLP D LL++DESHV+VPQ+GAMYKGDRSRK  LV
Sbjct: 304 CSGIENYSRYLSGRRPGEGPPTLLDYLPADGLLILDESHVTVPQIGAMYKGDRSRKMNLV 363

Query: 362 EYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRVIEQLVRPTGLVDPE 420
           EYGFRLPSALDNRP++F+E+E++ PQTIFVSATP  YE + + G + EQ+VRPTGL+DPE
Sbjct: 364 EYGFRLPSALDNRPLKFEEFESLMPQTIFVSATPAQYELDKSDGEIAEQVVRPTGLLDPE 423

Query: 421 IEIRPALTQVDDLLSEITKRVALEERVLVTTLTKRMSEDLTDYLADHGVRVRYLHSDIDT 480
           IE+RP   QVDDLLSE  KRVA+ ERVLVTTLTKRM+EDLT+YL +HGV+VRYLHSDIDT
Sbjct: 424 IEVRPVAIQVDDLLSEANKRVAVNERVLVTTLTKRMAEDLTEYLDEHGVKVRYLHSDIDT 483

Query: 481 VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 540
           VERVEIIRDLRLG FDVLVGINLLREGLDMPEVSLV ILDADKEGFLRSERSLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 541 ARNLNGRAILYADRITGSMERAIGETQRRRDKQIAFNLENGITPKGVFKDVADIMEGATV 600
           ARN+NG+ ILYAD +T SM +AIGET+RRR+KQ  FNL NGITPKGV K +AD+M+    
Sbjct: 544 ARNVNGKVILYADNMTKSMAKAIGETERRREKQREFNLANGITPKGVSKKIADVMDLGDY 603

Query: 601 PGSRSKKRKGMAKAAEESAKYENELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQTRDE 660
               +K      K AE    Y  +    S ++ +I +LE++M+Q ARDLEFE AA  RDE
Sbjct: 604 NEHTAKVLPKYQKVAESRTTYAKQ--DASSLSHQIDELEKRMHQHARDLEFEQAAALRDE 661

Query: 661 IGKLRERLL 669
           +  LRE L+
Sbjct: 662 VLALREALI 670