Pairwise Alignments

Query, 671 a.a., excinuclease ABC subunit B from Pseudomonas fluorescens SBW25

Subject, 698 a.a., Probable excinuclease ABC (subunit B-helicase) UvrB from Mycobacterium tuberculosis H37Rv

 Score =  728 bits (1879), Expect = 0.0
 Identities = 374/684 (54%), Positives = 492/684 (71%), Gaps = 20/684 (2%)

Query: 4   FQLVTRFEPAGDQPEAIRQMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQINRPTLVLA 63
           F++V+   PAGDQP AI ++   I AG     LLG TG+GK+ + A +I ++ RPTLV+A
Sbjct: 7   FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66

Query: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123
           PNKTLAAQL  E +   P+NAVEYFVSYYDYYQPEAY+  +DT+IEKD+SIND +E++R 
Sbjct: 67  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126

Query: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRELLRRLTSLQYTRN 183
           SAT ALL R+D ++V +VSCIYGLG+P++YL   + +  G+++ +  LLR L  +QYTRN
Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 186

Query: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243
           DM F R +FRVRGD ++I P+  +L A+RIE F DE+E+L    PLTGEVIR++     +
Sbjct: 187 DMSFTRGSFRVRGDTVEIIPSYEEL-AVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245

Query: 244 PKSHYVTPRETLMGAIEGIKVELAERLEYLRSNNKLVEAQRLEQRTRFDLEMILELGYCN 303
           P +HYV   E +  A+  I+ ELAERL  L S  KL+EAQRL  RT +D+EM+ ++G+C+
Sbjct: 246 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 305

Query: 304 GIENYSRYLSGRESGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363
           GIENYSR++ GR  G PP TL DY P D LLVIDESHV+VPQ+G MY+GD SRK  LVEY
Sbjct: 306 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 365

Query: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYE-AEHAGRVIEQLVRPTGLVDPEIE 422
           GFRLPSA DNRP+ ++E+     QT+++SATPG YE ++  G  +EQ++RPTGLVDP++ 
Sbjct: 366 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 425

Query: 423 IRPALTQVDDLLSEITKRVALEERVLVTTLTKRMSEDLTDYLADHGVRVRYLHSDIDTVE 482
           ++P   Q+DDL+ EI  R   ++RVLVTTLTK+M+EDLTDYL + G+RVRYLHS++DT+ 
Sbjct: 426 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485

Query: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542
           RVE++R LRLG +DVLVGINLLREGLD+PEVSLVAILDADKEGFLRS RSLIQTIGRAAR
Sbjct: 486 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 545

Query: 543 NLNGRAILYADRITGSMERAIGETQRRRDKQIAFNLENGITPKGVFKDVADIME------ 596
           N++G   +YAD+IT SM  AI ET+RRR KQIA+N  NGI P+ + K +ADI++      
Sbjct: 546 NVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYREA 605

Query: 597 ---------GATVPGSRSKKRKGMAKAAEESAKYENELRSP---SEITKRIRQLEEKMYQ 644
                    G+    SR ++ +G    A  +  +E    S    +E+   I+ L  +M  
Sbjct: 606 DDTAVVEVGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELADLIKDLTAQMMA 665

Query: 645 LARDLEFEAAAQTRDEIGKLRERL 668
            ARDL+FE AA+ RDEI  L+  L
Sbjct: 666 AARDLQFELAARFRDEIADLKREL 689