Pairwise Alignments

Query, 671 a.a., excinuclease ABC subunit B from Pseudomonas fluorescens SBW25

Subject, 677 a.a., excinuclease ABC subunit B (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  722 bits (1863), Expect = 0.0
 Identities = 367/672 (54%), Positives = 493/672 (73%), Gaps = 11/672 (1%)

Query: 3   DFQLVTRFEPAGDQPEAIRQMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQINRPTLVL 62
           +F+L + ++P GDQPEAI Q+ EG+  G+  QTLLGVTGSGKTF+IANVIA IN+PTL+L
Sbjct: 2   NFELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLIL 61

Query: 63  APNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMR 122
           + NKTLAAQLY EFK FFPNNAVEY+VSYYDYYQPEAY+P+SDT+IEKD +IND I+++R
Sbjct: 62  SHNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPNSDTYIEKDLAINDEIDKLR 121

Query: 123 LSATKALLE-RKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRELLRRLTSLQYT 181
           L+AT +LL  RKD ++V++VSCIYG+G+P  + K V+ ++RG  LD+   LRRL    Y 
Sbjct: 122 LAATSSLLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMLDRNVFLRRLVDSLYV 181

Query: 182 RNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFT 241
           RND+D  R  FRV+GD +DI+ A SD   +R+  + DE++ +   DP+TG        + 
Sbjct: 182 RNDIDLNRGNFRVKGDTVDIFLAYSDT-LLRVTFWGDEIDGIEEVDPITGVTTAPFEAYK 240

Query: 242 FYPKSHYVTPRETLMGAIEGIKVELAERLEYLRSNNKLVEAQRLEQRTRFDLEMILELGY 301
            YP + ++T +E  + AI  I+ +L +++ +  S  K  EA+RL +R  +D+EMI ELG+
Sbjct: 241 IYPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGH 300

Query: 302 CNGIENYSRYLSGRESGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLV 361
           C+GIENYSRY  GR +G  P  L D+ P D LLVIDESHVSVPQV AMY GDR+RK  LV
Sbjct: 301 CSGIENYSRYFDGRAAGTRPYCLLDFFPDDFLLVIDESHVSVPQVRAMYGGDRARKINLV 360

Query: 362 EYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEA-EHAGRVIEQLVRPTGLVDPE 420
           EYGFRLP+A+DNRP++F+E+E ++ Q I+VSATP  YE  +  G V+EQ++RPTGL+DP 
Sbjct: 361 EYGFRLPAAMDNRPLKFEEFEEMTKQVIYVSATPAEYELIQSEGIVVEQVIRPTGLLDPV 420

Query: 421 IEIRPALTQVDDLLSEITKRVALEERVLVTTLTKRMSEDLTDYLADHGVRVRYLHSDIDT 480
           IE+RP+L Q+DDL+ EI  R+  EERVLVTTLTKRM+E+LT+YL ++ VR  Y+HSD+DT
Sbjct: 421 IEVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELTEYLLNNNVRCNYIHSDVDT 480

Query: 481 VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 540
           +ERV+I+ DLR G +DVL+G+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GRA
Sbjct: 481 LERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRA 540

Query: 541 ARNLNGRAILYADRITGSMERAIGETQRRRDKQIAFNLENGITPKGVFKDVADIMEGATV 600
           ARN+NG+ I+YAD+IT SM   I ET RRR+KQ+A+N  NGITP+ + K  A  +     
Sbjct: 541 ARNVNGKVIMYADKITDSMRLTIDETNRRREKQLAYNEANGITPQQIKK--ARNLSVFGS 598

Query: 601 PGSRS----KKRKGMAKAAEESAKYEN--ELRSPSEITKRIRQLEEKMYQLARDLEFEAA 654
           PGS +    K++    + +  +   +   +  S +++ K I +  + M + A+ LEF  A
Sbjct: 599 PGSEADELLKEKHAYVEPSSPNIAADPIVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEA 658

Query: 655 AQTRDEIGKLRE 666
           AQ R+E+ KL +
Sbjct: 659 AQYRNELLKLED 670