Pairwise Alignments

Query, 671 a.a., excinuclease ABC subunit B from Pseudomonas fluorescens SBW25

Subject, 673 a.a., excinuclease ABC subunit B (RefSeq) from Shewanella sp. ANA-3

 Score =  929 bits (2402), Expect = 0.0
 Identities = 461/674 (68%), Positives = 568/674 (84%), Gaps = 12/674 (1%)

Query: 2   SDFQLVTRFEPAGDQPEAIRQMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQINRPTLV 61
           S FQL ++F PAGDQP AI ++V+G+E+GLA QTLLGVTGSGKTF+IANVIAQ+ RPT++
Sbjct: 4   SVFQLESQFAPAGDQPTAIAKLVDGLESGLACQTLLGVTGSGKTFTIANVIAQLGRPTII 63

Query: 62  LAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQM 121
           +APNKTLAAQLYGE K FFPNNAVEYFVSYYDYYQPEAYVP+S+TFIEKDAS+N HIEQM
Sbjct: 64  MAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQM 123

Query: 122 RLSATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRELLRRLTSLQYT 181
           RLSATKALLERKD +++ +VS IYGLG P++Y+KM+LH+ +GD + QR++L+RL+ LQYT
Sbjct: 124 RLSATKALLERKDVVLIASVSAIYGLGDPDSYMKMLLHLRQGDTMGQRDILKRLSELQYT 183

Query: 182 RNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFT 241
           RND++  R TFR RG+VIDI+PA+SD   IR+ELFDDE+E LS FDPLTG++++++ R T
Sbjct: 184 RNDLELQRGTFRARGEVIDIFPADSDRYGIRVELFDDEIERLSEFDPLTGQIVKRIARTT 243

Query: 242 FYPKSHYVTPRETLMGAIEGIKVELAERLEYLRSNNKLVEAQRLEQRTRFDLEMILELGY 301
            YPK+HYVTPRE ++ A E IK EL ER +YL  NNKL+EAQR+ +R ++D+EM++ELGY
Sbjct: 244 VYPKTHYVTPREKILEATESIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMMVELGY 303

Query: 302 CNGIENYSRYLSGRESGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLV 361
           C+GIENYSRYLSGR  G  PPTL DYLP D LL+IDESHV+VPQ+GAMYKGDRSRK TLV
Sbjct: 304 CSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTLV 363

Query: 362 EYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRVIEQLVRPTGLVDPE 420
           EYGFRLPSALDNRP++F+E+E + PQTI+VSATP  YE + + G ++EQ+VRPTGL+DPE
Sbjct: 364 EYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNPYELDKSGGEIVEQVVRPTGLLDPE 423

Query: 421 IEIRPALTQVDDLLSEITKRVALEERVLVTTLTKRMSEDLTDYLADHGVRVRYLHSDIDT 480
           +E+RP   QVDDLLSE+ KRVA+ ERVLVTTLTKRMSEDLT+YL +HGV+VRYLHSDIDT
Sbjct: 424 LEVRPVSIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDT 483

Query: 481 VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 540
           VERVEIIRDLRLG FDVLVGINLLREGLDMPEVSLV ILDADKEGFLRSERSLIQTIGRA
Sbjct: 484 VERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRA 543

Query: 541 ARNLNGRAILYADRITGSMERAIGETQRRRDKQIAFNLENGITPKGVFKDVADIMEGATV 600
           ARN+NG+ ILYADRIT SM +A+GET+RRR+KQ A+NLE+GI PKGV K + D+M+   V
Sbjct: 544 ARNVNGKVILYADRITQSMAKAMGETERRREKQHAYNLEHGIVPKGVVKRITDVMD---V 600

Query: 601 PGSRSKKR----KGMAKAAEESAK-YENELRSPSEITKRIRQLEEKMYQLARDLEFEAAA 655
              R  ++      + K AE  AK Y+ +    ++++  I +LE++M++ AR+LEFE AA
Sbjct: 601 DDGRDTEKGYSPSSLGKVAEPKAKRYQAD---AAQLSHDIDKLEKQMHEHARNLEFEQAA 657

Query: 656 QTRDEIGKLRERLL 669
             RDE+ +LRE L+
Sbjct: 658 ALRDEVKRLRELLI 671