Pairwise Alignments

Query, 319 a.a., sugar ABC transporter substrate-binding protein from Pseudomonas fluorescens SBW25

Subject, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

 Score =  144 bits (363), Expect = 3e-39
 Identities = 91/286 (31%), Positives = 167/286 (58%), Gaps = 13/286 (4%)

Query: 19  SAALPLSSAFADDAAAKPKVGLVMKSLANEFFVTMQDGAKAYQKDHAADFDMITNGIKNE 78
           SAAL LS++ +  A A+  V +V+ +L N FFVTM+DGA+A  K+    +++I   + ++
Sbjct: 11  SAAL-LSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKE--LGYNLIV--LDSQ 65

Query: 79  TDTSAQIDIVNQMILSKVNAIVIAPADSKALVTVLKKASDAGIKVVNIDNRLDPDVLKSK 138
            D S ++  V  + +  V AI+I P DS A+   ++ A+ + I V+ +D         S+
Sbjct: 66  NDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGA------SR 119

Query: 139 NLNIPFVGPDNRKGSRLVGDYLAKQLASGDKVGIIEGVPTTTNAQQRTAGFKDAMDAAGM 198
              +  +  DN  G  + G ++  ++ S  KV  +EG+  T+ A++R  GF +A+  + M
Sbjct: 120 GEVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVKGSKM 179

Query: 199 KIVSTQSGNWEIDQGQKVASAMLSEYPDLKALLAGNDNMALGAVSAVRAAGKAGKVLVVG 258
           +++++Q  +++  +G  V   +L+  PD++A+ A ND MALGA+ A++A+GK+  V++VG
Sbjct: 180 QLLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGKS--VMIVG 237

Query: 259 YDNIEAIKPMLQDGRVLATADQAAAQQAVFGIQNALKLVKGEKVDS 304
           +D  +     ++ G++ AT  Q        GI+ A K++KGEKV++
Sbjct: 238 FDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEA 283