Pairwise Alignments

Query, 400 a.a., type II secretion system protein GspF from Pseudomonas fluorescens SBW25

Subject, 406 a.a., general secretion pathway protein F (RefSeq) from Shewanella loihica PV-4

 Score =  218 bits (554), Expect = 3e-61
 Identities = 142/408 (34%), Positives = 229/408 (56%), Gaps = 12/408 (2%)

Query: 1   MSLFKYRALDSQGQAQNGTLEAKDQDAAVAALHKRGLLLLQI-----EVAGAQGLRKAFG 55
           M  F+Y+AL++QG+ Q G +EA     A   L +  L+ L+I     + A A+    +F 
Sbjct: 1   MPAFEYKALNAQGKQQKGVVEADTARHARGQLRELRLMPLEITPVVEKEAKAKSGGFSFK 60

Query: 56  RGQLNGAALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGQPLS 115
           RG ++ A L   T+Q+ATL+ AG P+E +L  + +Q  + +  +++  +R +V  G  L+
Sbjct: 61  RG-ISVAELALITRQIATLVAAGLPVEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLA 119

Query: 116 KALEEEGDQFSPLYLSMVRAGEAGGALEDTLRQLSDYLERSQLLRGEVINALIYPAFLVV 175
            ++ E    F  LY +MV +GE  G LE  L +L+DY ER Q L+ ++  A+IYP  L +
Sbjct: 120 DSMAEFPHIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKTKMTQAMIYPIVLTL 179

Query: 176 GVLGSLALLLAYVVPQFVPIFKDLGVPIPLITEVILGLGQFLGAYGL---AVLAGLIVGA 232
             +  +A+LLA VVPQ V  F+ +G  +P  T+ ++    F+  YGL    V+  L+VGA
Sbjct: 180 VAISVIAILLAAVVPQVVGQFEHMGQELPWTTQFLIASSDFVRDYGLIVIGVIIALVVGA 239

Query: 233 WTVVARLRDPQRRERYDRRVLGIRILGPLLQRVEAARLARTLGTLLSNGVALLQALVIAR 292
             +   LR    R +YD  +L + ++G + + +  AR ARTL  L ++ V LL A+ IA 
Sbjct: 240 KQL---LRSAANRMKYDSAILKMPVVGRVSKGLNTARFARTLSILTASSVPLLDAMRIAS 296

Query: 293 QVCTNRALQAQVAQAAESVKGGGTLASAFGSEPLLPDLALQMIEVGEQAGELDSMLLKVA 352
           +V  N  ++A V +A   V+ G +L +A  +  L P + L MI  GE++G+L+ ML + A
Sbjct: 297 EVLMNVRVRAAVEEATARVREGTSLGAALANTKLFPPMMLYMITSGEKSGQLEQMLERAA 356

Query: 353 DVFDVEAKRGIDRLLAALVPSLTVVMAVLVAVIMLAIMLPLMSLTSNI 400
           D  D E +  ++  L    P L V MA +V  I+LAI+ P++ L + I
Sbjct: 357 DNQDREFESNVNIALGVFEPMLVVSMAAVVLFIVLAILQPILELNNMI 404