Pairwise Alignments

Query, 400 a.a., type II secretion system protein GspF from Pseudomonas fluorescens SBW25

Subject, 422 a.a., type II secretion system protein (RefSeq) from Shewanella loihica PV-4

 Score =  193 bits (490), Expect = 9e-54
 Identities = 115/394 (29%), Positives = 212/394 (53%), Gaps = 4/394 (1%)

Query: 4   FKYRALDSQGQAQNGTLEAKDQDAAVAALHKRGLLLLQIEVAGAQGLRKAFGRGQLNGAA 63
           F+++  +  G+  +G L         A L  +G+    ++   A+ L K+  + +    A
Sbjct: 26  FEWKGTNRDGKKTSGELRGTSPAEIKAQLKSQGVNPKVVKKK-AEPLFKSDPKIKAMDIA 84

Query: 64  LVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGQPLSKALEEEGD 123
           ++  T+Q+AT+L AG P+  +L +L +   +P+ R L+  I   V++G PLS +L+    
Sbjct: 85  MI--TRQIATMLAAGVPIVTTLEMLGRGHEKPRMRELLGTIVADVQSGIPLSDSLKPHRQ 142

Query: 124 QFSPLYLSMVRAGEAGGALEDTLRQLSDYLERSQLLRGEVINALIYPAFLVVGVLGSLAL 183
            F  LY+ +V AGE  G+L+    +++ Y E+++ L+ ++  A+ YPA ++V  +    L
Sbjct: 143 YFDDLYVDLVGAGEHSGSLDAVFDRIATYREKAEALKSKIKKAMFYPAAVIVVAIAVTTL 202

Query: 184 LLAYVVPQFVPIFKDLGVPIPLITEVILGLGQFLGAYGLAVLAGLIVGAWTV-VARLRDP 242
           LL +VVPQF  IF   G  +P  T++I+ + ++L +     + G++V  W+   A L+  
Sbjct: 203 LLLFVVPQFEDIFAGFGAELPAFTQMIVSISRWLQSSWYFFVIGIVVSIWSFKKAHLKSA 262

Query: 243 QRRERYDRRVLGIRILGPLLQRVEAARLARTLGTLLSNGVALLQALVIARQVCTNRALQA 302
             R + D  VL I I+G +L +   AR ARTL T  + GV L+  L  A     N   ++
Sbjct: 263 GFRNKVDELVLKIPIIGEILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNYVYRS 322

Query: 303 QVAQAAESVKGGGTLASAFGSEPLLPDLALQMIEVGEQAGELDSMLLKVADVFDVEAKRG 362
            + +    V  G  +  A  +  L PD+ +QM+ +GE++G LD ML K+A++++++    
Sbjct: 323 ALTKVRTEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGGLDDMLNKIANIYEMQVDDA 382

Query: 363 IDRLLAALVPSLTVVMAVLVAVIMLAIMLPLMSL 396
           +D L + + P + VV+  LV  +++ + LP+  +
Sbjct: 383 VDGLSSLIEPMMMVVIGTLVGGLIIGMYLPIFQM 416