Pairwise Alignments

Query, 400 a.a., type II secretion system protein GspF from Pseudomonas fluorescens SBW25

Subject, 405 a.a., type II secretion system protein (RefSeq) from Shewanella loihica PV-4

 Score =  192 bits (488), Expect = 1e-53
 Identities = 119/400 (29%), Positives = 208/400 (52%), Gaps = 6/400 (1%)

Query: 1   MSLFKYRALDSQGQAQNGTLEAKDQDAAVAALHKRGLL---LLQIEVAGAQGLRKAFGRG 57
           M +++Y+  D+QG A +G L+A  Q AA   L  R ++   L++ +VA    L   F + 
Sbjct: 1   MPIYQYKGRDAQGNAVSGRLDATTQSAAADQLLSRAVIPLELVEAKVAREFHLGSLF-KS 59

Query: 58  QLNGAALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGQPLSKA 117
           ++    L  FT+Q+ +L  +G P+ R++  L +     + +  +  I EQ+ +G+PLS A
Sbjct: 60  KVGLDELQIFTRQMYSLTRSGIPILRAIAGLSESSHSKRMKDALNDISEQLISGRPLSSA 119

Query: 118 LEEEGDQFSPLYLSMVRAGEAGGALEDTLRQLSDYLERSQLLRGEVINALIYPAFLVVGV 177
           +    D F  L++SM+  GE  G LED   QLS Y+ER Q  R  +  A+ YP F+++ V
Sbjct: 120 MNHHPDVFDALFVSMIHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPIFVLMAV 179

Query: 178 LGSLALLLAYVVPQFVPIFKDLGVPIPLITEVILGLGQFLGAYGLAVLAGLIVGAWTVVA 237
             ++ +L   V+P+F  +F   G  +P  T++++G   F   Y   +L  L VG +  + 
Sbjct: 180 ALAMVVLNIMVIPKFADLFARFGADLPWATKLLIGTSNFFVNYWYLLLIAL-VGCFVGIR 238

Query: 238 RLRDPQRRE-RYDRRVLGIRILGPLLQRVEAARLARTLGTLLSNGVALLQALVIARQVCT 296
              + ++ E ++DR  L I  +G +++R   +R  R+   +LS GV + QAL +      
Sbjct: 239 YWHNTEKGEQQWDRWKLKIPAVGSIIERSTLSRYCRSFSMMLSAGVPMTQALSLVADAVD 298

Query: 297 NRALQAQVAQAAESVKGGGTLASAFGSEPLLPDLALQMIEVGEQAGELDSMLLKVADVFD 356
           N  +  ++      ++ G ++        L   L LQM+ VGE+ G++D +L   AD ++
Sbjct: 299 NAYMHDRIVAMRRGIESGESMLRVSNQSQLFTPLVLQMVAVGEETGQIDQLLNDAADFYE 358

Query: 357 VEAKRGIDRLLAALVPSLTVVMAVLVAVIMLAIMLPLMSL 396
            E    +  L A L P L  ++AV+V ++ L I LP+  +
Sbjct: 359 GEVDYDLKNLTAKLEPILIGIVAVIVLILALGIYLPMWDM 398