Pairwise Alignments

Query, 400 a.a., type II secretion system protein GspF from Pseudomonas fluorescens SBW25

Subject, 406 a.a., MSHA biogenesis protein MshG (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  197 bits (502), Expect = 3e-55
 Identities = 124/406 (30%), Positives = 208/406 (51%), Gaps = 18/406 (4%)

Query: 1   MSLFKYRALDSQGQAQNGTLEAKDQDAAVAALHKRGLLLLQIEVAGAQGLRKAFGRGQLN 60
           M +++YR    QGQA  G L+A  + AA   L  RG++ L+++ A    + K+F   QL 
Sbjct: 1   MPVYQYRGRSGQGQAVTGQLDAASESAAADMLLSRGIIPLEVKAAK---VAKSFSLTQLF 57

Query: 61  GAA-----LVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGQPLS 115
           G+      L  FT+Q+ +L  +G P+ R++  L +     + +  +  I EQ+ AG+PLS
Sbjct: 58  GSKVGLDELQIFTRQMYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLS 117

Query: 116 KALEEEGDQFSPLYLSMVRAGEAGGALEDTLRQLSDYLERSQLLRGEVINALIYPAFLVV 175
            A+ +  D F  L++SMV  GE  G LED   QLS Y+ER Q  R  +  A+ YP F+++
Sbjct: 118 SAMNQHPDVFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPIFVLI 177

Query: 176 GVLGSLALLLAYVVPQFVPIFKDLGVPIPLITEVILGLGQFLGAYG---LAVLAGLIVGA 232
            +  ++ +L   V+P+F  +F   G  +P  T+V++G       Y    L +L G I+G 
Sbjct: 178 AIGLAMVILNIMVIPKFAEMFSRFGADLPWATKVLIGTSNLFVNYWPLMLVMLLGAIIGI 237

Query: 233 --WTVVARLRDPQRRERYDRRVLGIRILGPLLQRVEAARLARTLGTLLSNGVALLQALVI 290
             W         +  +++D+  L I  +G +++R   AR  R+   +LS GV + QAL +
Sbjct: 238 RYWH-----HTEKGEKQWDKWKLHIPAVGSIIERSTLARYCRSFSMMLSAGVPMTQALSL 292

Query: 291 ARQVCTNRALQAQVAQAAESVKGGGTLASAFGSEPLLPDLALQMIEVGEQAGELDSMLLK 350
                 N  +  ++      ++ G ++        L   L LQM+ VGE+ G++D +L  
Sbjct: 293 VADAVDNAYMHDKIVGMRRGIESGESMLRVSNQSKLFTPLVLQMVAVGEETGQIDQLLND 352

Query: 351 VADVFDVEAKRGIDRLLAALVPSLTVVMAVLVAVIMLAIMLPLMSL 396
            AD ++ E    +  L A L P L  ++AV+V ++ L I LP+  +
Sbjct: 353 AADFYEGEVDYDLKNLTAKLEPILIGIVAVIVLILALGIYLPMWDM 398