Pairwise Alignments

Query, 400 a.a., type II secretion system protein GspF from Pseudomonas fluorescens SBW25

Subject, 408 a.a., general secretion pathway protein F, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  188 bits (478), Expect = 2e-52
 Identities = 121/404 (29%), Positives = 199/404 (49%), Gaps = 9/404 (2%)

Query: 1   MSLFKYRALDSQGQAQNGTLEAKDQDAAVAALHKRGLLLLQIEVAGAQGLRKAFGRGQLN 60
           M+ F Y A +  G    G ++A+  +AA A L  RG + L+++     G   + G G L 
Sbjct: 1   MASFSYTARNENGVKMEGVIDAESTEAARAILFSRGYVPLEVKAGAGGGF--SLGLGALA 58

Query: 61  GAA-------LVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGQP 113
            A        L+ FT+Q  TL  AG P+ + L +L  Q    + +A+   + + +  G  
Sbjct: 59  DALSPIPPKELILFTKQFRTLFQAGIPITQLLQVLQNQTEHKRLKAIAAEMSQAIMGGAT 118

Query: 114 LSKALEEEGDQFSPLYLSMVRAGEAGGALEDTLRQLSDYLERSQLLRGEVINALIYPAFL 173
           L  A       FS LY SM+RAGEA GAL + + +L   LE    +R ++ +AL YP  +
Sbjct: 119 LYDAFRAHPKVFSELYCSMMRAGEASGALGEVMDRLVYLLEHEHKIRSDIKSALRYPKMV 178

Query: 174 VVGVLGSLALLLAYVVPQFVPIFKDLGVPIPLITEVILGLGQFLGAYGLAVLAGLIVGAW 233
           +  +  +  +LL  V+P+FV IF    + +P  T++ +G+      Y   VLA ++ G  
Sbjct: 179 MGALAVAFFVLLNLVIPKFVLIFSQARITLPWPTKIAIGMHYVFSTYWYVVLAVVVAGTV 238

Query: 234 TVVARLRDPQRRERYDRRVLGIRILGPLLQRVEAARLARTLGTLLSNGVALLQALVIARQ 293
                +R    R   DR VL +  +GP++Q+   AR A     L S+GV++L AL +   
Sbjct: 239 AYKYWVRTEDGRYWRDRLVLRLPGVGPVIQKSVMARFASIFAILQSSGVSVLDALDVLNN 298

Query: 294 VCTNRALQAQVAQAAESVKGGGTLASAFGSEPLLPDLALQMIEVGEQAGELDSMLLKVAD 353
              N A+  +  +  + ++ G  +A    +      L + M+ +GE++G LD+ML  VA 
Sbjct: 299 TIGNAAIAREFTRIQDQLREGRGIAEPLRTARFFTPLVVNMVAIGEESGSLDAMLNDVAR 358

Query: 354 VFDVEAKRGIDRLLAALVPSLTVVMAVLVAVIMLAIMLPLMSLT 397
            +D E +  +  +  A+ P L V +A +V    LAI +P+  LT
Sbjct: 359 HYDEEVEYAVAGMAEAIGPVLIVALAAVVGFFALAIFMPMWDLT 402