Pairwise Alignments

Query, 1073 a.a., efflux RND transporter permease subunit from Pseudomonas fluorescens SBW25

Subject, 1038 a.a., acriflavin resistance protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  341 bits (875), Expect = 1e-97
 Identities = 274/1063 (25%), Positives = 491/1063 (46%), Gaps = 79/1063 (7%)

Query: 9    LQKPYTFIVLAIFICIIGPMAALRTPTDVFPDIGIPVVAVVWQYNGLSPDAMAGRVIYTY 68
            +++P T  ++ + + + G +     P    P++  P + V  + +G  P+ MA  V    
Sbjct: 8    IRRPVTTCLVMLAMFLFGVVGYRNLPVSDLPNVDFPTIQVTAELSGADPETMASAVATPL 67

Query: 69   ERSLSTTVNDIEHIESQSLPGMGIVKIFFQPGVDIRTANAQVTAVSQTVLKQMPPGIT-P 127
            ER  +T +  I+ + S S  G   + I F    DI  A   V +      +++P  +T P
Sbjct: 68   ERQFAT-IAGIDSMTSSSTLGRTRITIQFALDRDIDAAALDVQSAISQAARRLPDDMTTP 126

Query: 128  PLILNYSASTVPILQMAFSSPSLSEARIRDLVQNNIRLPLSALPGLAMPTPMGGKQRQIT 187
            P     + +  PIL +A +SP+L  +++ +     +   +S + G+A     G ++  + 
Sbjct: 127  PYFRKVNPADQPILYIALTSPTLPLSQVNEYADTMLAQRISMVAGVAQVQVYGSQKYAVR 186

Query: 188  LDLDPQALAAKGLSAQDVGNALALQNQIIPVGTAKLGPNEYTILLNNSPKAIDELNDLPI 247
              +DP+ALA +G+   +V  A++  N  +P GT +       I  +           + +
Sbjct: 187  AQVDPRALATRGIGLDEVAKAISDSNVNLPTGTLQGDHTSRNIQASGQLFDAASYRPMVV 246

Query: 248  KTVDGALITIGQVAHVRDGSPPQTNIVRVDGHRAVLMPALKNGSISTLSIIDGIRQMLPR 307
               DGA + +G++  V D           +  R +++   +    +T+++++ ++++LP 
Sbjct: 247  AWRDGAPVRLGELGRVIDSVEQDRQFTWFNDTRGIVLAVQRQPGSNTVAVVNAVKELLPS 306

Query: 308  INETLPPSLKTSLLGDASVFVKQSVGSVAQEGIIAALLTSAMILLFLGSWRSTIIIAASI 367
                LP S++ +++ D S  +++SV  V    ++  +L   +I LFL S  +T+I + ++
Sbjct: 307  FERQLPASVQLNVMYDRSQTIRESVDDVKFTLVLTVVLVVLVIFLFLRSLSATVIPSLAL 366

Query: 368  PLAVLSAIALLAVSGQTLNVMTLGGLALAVGILVDDATVTIENINWHLEQGKPVKTAILD 427
            P++V+   AL+ V G +L+ ++L  L LAVG +VDDA V +ENI  H E GKPV  A LD
Sbjct: 367  PMSVVGTFALMYVFGHSLDNLSLMALTLAVGFVVDDAIVMLENIVRHKEMGKPVMQAALD 426

Query: 428  GAAQIVGPAFVSLLCICIVFVPMFLLQGIAGYLFRPMALAVIFAMASSFILSRTLVPTLA 487
            G+ +I        + +  VF+P+  + G+ G LFR  ++ ++ A+  S ++S TL P L 
Sbjct: 427  GSKEIGFTIISMTISLAAVFIPVLFMGGVVGRLFREFSVVIMVAIGLSGVVSLTLTPMLC 486

Query: 488  MFLLKPHTPEPGAGHHPEDEFINHHEGEQHTQQRNAVLQSVLNFQQGFERHFSNIRDTYH 547
               LKPH    GA              E+H +  NA+           E  F  +   Y 
Sbjct: 487  SRFLKPH----GA--------------ERHGRVYNAL-----------EAFFDGLLHIYE 517

Query: 548  GLLTLALGNRKRFI-----VGFLACVLASFLLLPSLGQDFFPATDAGALALHVRLPLGTR 602
               TL    R  F+     +G L   +  F+ +P   + F P+ D G L+       G  
Sbjct: 518  --RTLRFTTRHHFMTFLVSLGVLGLTVWLFMTMP---KGFLPSGDTGQLS-------GFT 565

Query: 603  IEESAAAFD---RIEARIREIIPAEELDTIVDNIGIPLSGIDMAYSSSGTIGPQDGDIQV 659
              + + +FD   R +  +  ++ A+             S   +  +    +G   G + +
Sbjct: 566  EADQSISFDAMVRNQTALHAVLAADPAIA---------SFTSIVGAGGPNLGGNAGRLVI 616

Query: 660  SLKKDH---APTADYVKKLREALPHSFPGSHFAFLPADISSQILNFGAPAPLDVKISGRS 716
             LK  H         +++LR  L ++ PG   AF+    S  I      +     I G  
Sbjct: 617  MLKDRHERKETPEQIIQRLRPKL-NTLPGIQ-AFVSNPPSINIGGRTTKSLYQYTIQGPD 674

Query: 717  DEENRAYAVELERRLQHVPGIADLRIQQSTGYPSLQVNVDRMRANGLGITERDVTNSMVA 776
             +E    A  LE R++ +PG+ D+        P ++V + R +A  LG++ + V  ++ +
Sbjct: 675  TDELYRVAPLLEERMRTLPGLQDVTSDLQLKNPEVRVTIHRDKAAALGVSAQRVEEALQS 734

Query: 777  SLAGSSQVAPTFWLNPANGVSYSIVAATPQYRLDSLPSLEALPVTGADGQSQILGGVATI 836
                SS+   T +  P N  +  ++   P+Y+ D+   L  L V    G    L  +A++
Sbjct: 735  GF--SSRNVSTIYA-PTNDYAV-LLELLPEYQRDA-SVLPLLYVRANSGMLVPLDTLASL 789

Query: 837  SRVQSPAVVTHYNIEPTLDLYANVQ-GRDLGGVARDVQKVLDDTAALRPKGAVISLHGQI 895
            S    P  V H    P++ +  N++ G  LG     V++V    + L P   V S  G  
Sbjct: 790  SEGVGPLSVNHSGQLPSVTVSFNLRPGVALGEGVAQVEQV---ASPLLPADVVGSFQGTA 846

Query: 896  DALHEAFSGLSLGLLGAVVLIYLLIVVNFQSWSDPFVIITALPAALAGIVWMLFLSGTSL 955
             A   +  G+++ L  AV +IY+++ + ++S+  P  I++ LP+A  G +  L   G  L
Sbjct: 847  QAFQNSLQGMAMLLALAVFVIYIVLGILYESFIHPLTILSGLPSAGMGALLTLMFFGYDL 906

Query: 956  SVPALTGAILCMGVATANSILVVSFCRERLAEHGDALKAAMEAG-YTRFRPVCMTALAMI 1014
            ++ A  G I+ +G+   N+I+++ F  E     G A   A+  G   RFRP+ MT +A +
Sbjct: 907  NLYAFVGIIMLIGIVKKNAIMMIDFAIESERVEGRAPADAIFHGCLVRFRPIMMTTMAAL 966

Query: 1015 IGMLPLAI----SEEQNAPLGRAVIGGLIFATLATLLFVPVVF 1053
            +G LP+A+      E+  PLG AV+GGLI + L TL   PV +
Sbjct: 967  MGALPIAVGFGAGAEERRPLGLAVVGGLIVSQLLTLYITPVYY 1009



 Score = 75.1 bits (183), Expect = 3e-17
 Identities = 88/382 (23%), Positives = 163/382 (42%), Gaps = 22/382 (5%)

Query: 123  PGI-----TPPLILNYSASTVPILQMAFSSPSLSEA-RIRDLVQNNIRLPLSALPGLA-M 175
            PGI      PP I     +T  + Q     P   E  R+  L++  +R     LPGL  +
Sbjct: 643  PGIQAFVSNPPSINIGGRTTKSLYQYTIQGPDTDELYRVAPLLEERMR----TLPGLQDV 698

Query: 176  PTPMGGKQRQITLDLDPQALAAKGLSAQDVGNALALQNQIIPVGTAKLGPNEYTILLNNS 235
             + +  K  ++ + +     AA G+SAQ V  AL        V T     N+Y +LL   
Sbjct: 699  TSDLQLKNPEVRVTIHRDKAAALGVSAQRVEEALQSGFSSRNVSTIYAPTNDYAVLLELL 758

Query: 236  PKAIDELNDLPIKTV---DGALITIGQVAHVRDGSPPQTNIVRVDGHRAVLMPALKNGSI 292
            P+   + + LP+  V    G L+ +  +A + +G  P +       H   L     + ++
Sbjct: 759  PEYQRDASVLPLLYVRANSGMLVPLDTLASLSEGVGPLSV-----NHSGQLPSVTVSFNL 813

Query: 293  ST-LSIIDGIRQMLPRINETLPPSLKTSLLGDASVFVKQSVGSVAQEGIIAALLTSAMIL 351
               +++ +G+ Q+    +  LP  +  S  G A  F + S+  +A    +A  +   ++ 
Sbjct: 814  RPGVALGEGVAQVEQVASPLLPADVVGSFQGTAQAF-QNSLQGMAMLLALAVFVIYIVLG 872

Query: 352  LFLGSWRSTIIIAASIPLAVLSAIALLAVSGQTLNVMTLGGLALAVGILVDDATVTIE-N 410
            +   S+   + I + +P A + A+  L   G  LN+    G+ + +GI+  +A + I+  
Sbjct: 873  ILYESFIHPLTILSGLPSAGMGALLTLMFFGYDLNLYAFVGIIMLIGIVKKNAIMMIDFA 932

Query: 411  INWHLEQGKPVKTAILDGAAQIVGPAFVSLLCICIVFVPMFLLQGIAGYLFRPMALAVIF 470
            I     +G+    AI  G      P  ++ +   +  +P+ +  G      RP+ LAV+ 
Sbjct: 933  IESERVEGRAPADAIFHGCLVRFRPIMMTTMAALMGALPIAVGFGAGAEERRPLGLAVVG 992

Query: 471  AMASSFILSRTLVPTLAMFLLK 492
             +  S +L+  + P   M+L K
Sbjct: 993  GLIVSQLLTLYITPVYYMYLDK 1014