Pairwise Alignments

Query, 1073 a.a., efflux RND transporter permease subunit from Pseudomonas fluorescens SBW25

Subject, 1052 a.a., putative cation efflux transporter (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  384 bits (986), Expect = e-110
 Identities = 278/1075 (25%), Positives = 520/1075 (48%), Gaps = 71/1075 (6%)

Query: 2    LGLVKTALQKPYTFIVLAIFICIIGPMAALRTPTDVFPDIGIPVVAVVWQYNGLSPDAMA 61
            + L + A++KP    +  + + I G  +  + P D++PDI    + V+  Y G S   + 
Sbjct: 1    MSLYEGAVKKPIMTSLCFLAVVIFGLFSLSKLPIDLYPDIDTNTIMVMTAYPGASASDIE 60

Query: 62   GRVIYTYERSLSTTVNDIEHIESQSLPGMGIVKIFFQPGVDIRTANAQVTAVSQTVLKQM 121
              V    E +L+  V++++HI S+S   M ++ + F+ G DI      V      V  Q+
Sbjct: 61   NNVTRPLENTLNA-VSNLKHITSRSSENMSLITLEFEFGNDIDVLTNDVRDKLDMVSSQL 119

Query: 122  PPGITPPLILNYSASTVPILQMAFSSPSLSEARIRDLVQNNIRLPLSALPGLAMPTPMGG 181
            P  +  P+I  +S   +PI+ ++  +   S+A +  ++ + +  PL+ +PG+   +  G 
Sbjct: 120  PDDVENPIIFKFSTDMIPIVLLSVQANE-SQAALYKILDDRVVNPLARIPGVGTVSISGA 178

Query: 182  KQRQITLDLDPQALAAKGLSAQDVGNALALQNQIIPVGTAKLGPNEYTILLNNSPKAIDE 241
             QR+I +  DP  L A  LS + + + +  +N+ IP G   +G   Y + +        +
Sbjct: 179  PQREIQVYCDPNKLEAYNLSIETISSIIGAENKNIPGGNFDIGSETYALRVEGEFDDSRQ 238

Query: 242  LNDLPIKTVDGALITIGQVAHVRDGSPPQTNIVRVDGHRAVLMPALKNGSISTLSIIDGI 301
            L D+ + T +GA + +  VA + D    +      +G +  ++   K    +++ I   +
Sbjct: 239  LADIVVGTHNGANVFLRDVARIVDTVEERAQETYNNGVQGAMIVVQKQSGANSVEISRKV 298

Query: 302  RQMLPRINETLPPSLKTSLLGDASVFVKQSVGSVAQEGIIAALLTSAMILLFLGSWRSTI 361
             + LPR+ + LP  +K  ++ D S  +  ++ S+A+  + A L    ++ LFLG WR+T+
Sbjct: 299  EEALPRLQKNLPSDVKLGVIVDTSDNILNTIDSLAETVMYALLFVVIVVFLFLGRWRATL 358

Query: 362  IIAASIPLAVLSAIALLAVSGQTLNVMTLGGLALAVGILVDDATVTIENINWHLEQGKPV 421
            II  +IPL+++++   LA++G T+N+++L  L++A+G++VDDA V +EN+  H+E+G   
Sbjct: 359  IICITIPLSLIASFIYLAITGNTINIISLSSLSIAIGMVVDDAIVVLENVTTHIERGSDP 418

Query: 422  KTAILDGAAQIVGPAFVSLLCICIVFVPMFLLQGIAGYLFRPMALAVIFAMASSFILSRT 481
            K A + G  ++      S L +  VF P+ ++ G++G LF+ +   +   M  S + + +
Sbjct: 419  KQAAVHGTNEVAISVIASTLTMIAVFFPLTMVSGMSGVLFKQLGWMMCAIMFVSTVAALS 478

Query: 482  LVPTLAMFLLKPHTPEPGAGHHPEDEFINHHEGEQHTQQRNAVLQSVLNFQQGFERHFSN 541
            L P L   LL+                          Q+R + +  +  F    E+    
Sbjct: 479  LTPMLCSQLLR-------------------------LQKRPSKMFKL--FFTPIEKALDA 511

Query: 542  IRDTYHGLLTLALGNRKRFIVGFLACVLASFLLLPSLGQDFFPATDAGALALHVRLPLGT 601
            +   Y  +L  A+ +R   IVG +A  + S L    +G +FFPA D   +A+ + LP+GT
Sbjct: 512  LDTGYAKMLNWAVRHRPVVIVGCIAFFVVSLLCAKGIGTEFFPAQDNARIAVQLELPIGT 571

Query: 602  RIEESAAAFDRIE----ARIREII-----PAEELDTIVDNIGIPLSGIDMAYSSSGTIGP 652
            R E +    +++      + ++I+        + D+      +  +G  +   +   + P
Sbjct: 572  RKEIAQELSEKLTNQWLTKYKDIMKVCNYTVGQADSDNTWASMQDNGSHIISFNISLVDP 631

Query: 653  QDGDIQVSLKKDHAPTADYVKKLREALPHSFPGSHFAFLPADISSQILNFGAPAPLDVKI 712
             D DI +    D         ++R+ L   +P   F+     +        A A  D +I
Sbjct: 632  GDRDISLEAVCD---------EMRQDL-KGYP--EFSKAQVILGGSNTGMSAQASADFEI 679

Query: 713  SGRSDEENRAYAVELERRLQHVPGIADLRIQQSTGYPSLQVNVDRMRANGLGITERDVTN 772
             G       + A  L+R L  V G+ ++ I +S   P  QV+ DR +    G+      N
Sbjct: 680  YGYDMTMTDSVAARLKRELLTVKGVTEVNISRSDYQPEYQVDFDREKLAMHGLNLATAGN 739

Query: 773  SMVASLAGSSQVAPTFWLNPANGVSYSI-VAATPQYRLDSLPSLEALPVTGADGQSQILG 831
             +   + G+  VA  +     +G  Y I V   P+YR  SL S+E + +  A G+S  + 
Sbjct: 740  YLRNRINGA--VASKY---REDGDEYDIKVRYAPEYR-TSLESIENILIYNAKGESVRVK 793

Query: 832  GVATISRVQSPAVVTHYNIEPTLDLYANVQGRDLGGVARDVQKVLDDTAALRPKGAVISL 891
             V  +    +P  +   + E  + + A + G  LG V     K++D      P    I +
Sbjct: 794  DVGKVVERFAPPTIERKDRERIVTVSAVISGAPLGDVVAAGNKLIDKMDI--PGEITIQI 851

Query: 892  HGQIDALHEAFSGL-SLGLLGAVVLIYLLIVVNFQSWSDPFVIITALPAALAGIVWMLFL 950
             G  +   ++F  L +LG+L  V+L+++++   F+S + PF+I+ +LP A +G++  LF 
Sbjct: 852  SGSYEDQQDSFRDLGTLGIL-IVILVFIVMAAQFESLTYPFIIMFSLPFAFSGVLMALFF 910

Query: 951  SGTSLSVPALTGAILCMGVATANSILVVSF---CRERLAEHGDALKAAMEAGYTRFRPVC 1007
            +G++LSV +L G I+ +G+   N I+++ +   CRER       + + + +G +R RPV 
Sbjct: 911  TGSTLSVMSLLGGIMLIGIVVKNGIVLIDYITLCRERGMA---VINSVVTSGKSRLRPVL 967

Query: 1008 MTALAMIIGMLPLAI----SEEQNAPLGRAVIGGLIFATLATLLFVPVVFSLVHG 1058
            MT    ++GM+P+AI      E  +P+  AVIGGL  +T+ TL+ +P ++ +  G
Sbjct: 968  MTTATTVLGMIPMAIGGGQGSEMWSPMAIAVIGGLTVSTVLTLVLIPTLYCVFAG 1022