Pairwise Alignments

Query, 325 a.a., GDP-L-fucose synthase from Pseudomonas fluorescens SBW25

Subject, 309 a.a., putative UDP-glucose 4-epimerase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 70.9 bits (172), Expect = 4e-17
 Identities = 80/320 (25%), Positives = 137/320 (42%), Gaps = 40/320 (12%)

Query: 8   RIFVAGHRGMVGSAIVRRLWALGYTQI-----LTAGRDELDLLDSAAVQAYFAGHRVDQV 62
           RI V+G  G +GS +  RL   G+  I      T  +D +  L       +F   R D  
Sbjct: 3   RILVSGGAGFIGSHLCTRLVNEGHDVICLDNFFTGSKDNIKHLMG---NHHFEVVRHDVT 59

Query: 63  YLAAAKVGGIHANATYPADFIYQNLMIQA---NVINAAHSHGVQ-----HLLFLGSSCIY 114
           Y  +A+V  I+  A   +   YQ+  IQ    +V+ A +  G+       +L   +S +Y
Sbjct: 60  YPYSAEVDEIYNLACPASPIHYQHDPIQTAKTSVMGAINMLGLAMRLDAKILQASTSEVY 119

Query: 115 --PVHAPQPMIEAVLLDGALEPTN--EPYAVAKIAGIKLCESYNRQHGRDYRSVMPTNLY 170
             P+  PQP  E+    G + P      Y   K     L   Y RQ+    + +   N Y
Sbjct: 120 GDPIIHPQP--ESYW--GNVNPVGYRSCYDEGKRCAETLFMDYYRQNQTRIKIIRIFNTY 175

Query: 171 GPGDNYHPENSHVIAALLRRFHEATQRGDDEVVIWGSGRPRREFLHVDDMAAASVHVMEL 230
           GP     P +  V++  + +        ++++ I+G G+  R F ++DD+    V +M+ 
Sbjct: 176 GP--RMLPNDGRVVSNFIIQ-----ALNNEDITIYGDGKQTRSFQYIDDLIEGMVRMMDT 228

Query: 231 DAARYREQTQPMRSHLNVGTGVDCTIAELAEALVRVTGFRGRLRFDASKPDGAPRKLLDV 290
           +              +N+G   +  + ELAE ++R+TG   ++ F     D   ++  D+
Sbjct: 229 E--------DDFTGPINIGNPNEFPVLELAERVIRMTGSTSKIVFKPLPTDDPKQRQPDI 280

Query: 291 SRI-NALGWEAYVPLEEGLR 309
                 LGW+  V LE+GL+
Sbjct: 281 KLAKEKLGWQPTVELEDGLK 300