Pairwise Alignments

Query, 1023 a.a., error-prone DNA polymerase from Pseudomonas fluorescens SBW25

Subject, 1173 a.a., DNA-directed DNA polymerase III (polc) from Pseudomonas stutzeri RCH2

 Score =  364 bits (934), Expect = e-104
 Identities = 307/1091 (28%), Positives = 510/1091 (46%), Gaps = 129/1091 (11%)

Query: 1    MSYAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLAGIVRAWQAAKAVELP 60
            +S+  L   + +S   G      L +     G  A+A+TD   +  +V+ ++ A+   + 
Sbjct: 3    VSFVHLRLHTEYSLVDGLVRVKPLIKAVAAGGMPAVAVTDMSNMCSLVKFYKTAQGSGIK 62

Query: 61   LIIGSEVRI----ENGP--KLVLLVEDLSGYQHLCRLITLARRRAEKGSYRLLLEDFDQ- 113
             I G+++ +    E+GP  +L LL  +  GY++L  LI+      ++    ++  D+ + 
Sbjct: 63   PICGADIWMAGCDEDGPLSRLTLLAMNPKGYRNLTELISRGWTEGQRNDLVIIERDWVKL 122

Query: 114  PLPGLLALWVAEDSDT------------QASIQWLRRTFAERLWLAVHLHCGQDDAHRLE 161
               GL+AL  A++ +             +A +   R  FA+R +L +      +D   L 
Sbjct: 123  AAEGLIALSGAKEGEVGQALLNGDEALAEARLAEWRDVFADRFYLEIQRTSRVNDEEHLH 182

Query: 162  QRLNLAASLRIPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAGTRLHP------NGE 215
                LA     P VA  DV      R   Q+   A    V + E  T   P      + +
Sbjct: 183  AAAALADRTGTPLVATNDV------RFLKQEDFEAHETRVCIGEGRTLDDPRRPRTYSDQ 236

Query: 216  RHLRSLDALAALY---PHALLDETQAIARRCTFDLSQLRYHYPRELVPEGHDAESWLRAV 272
            ++L++   +A L+   P AL + T  IA+RC  ++    Y  P   VPEG   + +LR V
Sbjct: 237  QYLKTPAEMAELFSDLPEAL-ENTVEIAKRCNIEVQLGTYFLPNFPVPEGMTIDDYLRQV 295

Query: 273  TEAGIAQRWPQGVDAHT----------LQQIHKELALISELGYESYFLTVHDIVRFARSR 322
            +  G+ +R    +   T          + ++  EL  I ++G+  YFL V D +++A++ 
Sbjct: 296  SFEGLEERLEVLLPKDTPDYEAKKQVYIDRLEFELGTIIQMGFPGYFLIVMDFIKWAKNN 355

Query: 323  SI-LCQGRGSAANSAVCFALGITEIDPSLTSMLFERFLSKERNEPPDIDVDFEHERREEV 381
             + +  GRGS A S V + L IT++DP    +LFERFL+ ER   PD DVDF  + R+ V
Sbjct: 356  GVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRV 415

Query: 382  LQYVFQRYGRTRAALTAVVSSYHAAGAVRDVAKALGLPPDQVNALADCCGRWSDDAP-PL 440
            + YV + YGR   +      +  A   VRDVA+  G    +   LAD   R S   P  +
Sbjct: 416  IDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQG----KSYGLAD---RLSKMIPFEV 468

Query: 441  ERLREGGFDPQSPI---------LRRVLTLTQQLIGFPRHLSQHPGGFVISEYPLDTLVP 491
                E  ++ + P+          R +  +  +L G  R   +H GG VI+   L    P
Sbjct: 469  GMTLEKAYEMEEPLRDFLAVDEDAREIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFAP 528

Query: 492  VENAAMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRNR----DFSLA 547
            +         + Q+DKDD+++ GL+K D L L  L+ I+   + + R + +      ++ 
Sbjct: 529  IACDEEGGGLVTQFDKDDVESAGLVKFDFLGLRTLTIIKWALETINREQAKKGLEPINID 588

Query: 548  SLPKEDPATYAMISKADTIGVFQIESRAQMSMLPRLRPQTFYDLVIEVAIVRPGPIQGGM 607
             +P +D  TY ++ KA+T  VFQ+ESR    ++ +L+P    DL+  VA+ RPGP+Q GM
Sbjct: 589  FIPLDDKPTYQLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGM 648

Query: 608  VHPYLRRRNKEEETTYPSPE-----LEVVLQRTLGIPLFQEQVMQIAMVAADYGPGEADQ 662
            V  ++ R++   E +YP P+     LE VL+ T GI L+QEQVMQIA V A Y  G AD 
Sbjct: 649  VDDFINRKHGRAEVSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADM 708

Query: 663  LRRSMAAWKRHGGLEPHQERLRTGMLKNGYSEEFAAQIFEQIKGFGSYGFPESHAASFAL 722
            LRR+M   K+   +   +     G   NG  +E +  IF+ ++ F  YGF +SH+A++ L
Sbjct: 709  LRRAMGK-KKPEEMAKQRGGFIEGCSNNGIDKELSGNIFDLVEKFAGYGFNKSHSAAYGL 767

Query: 723  LTYASCWLKCHEPAAFACALINSWPMGFYSPDQI---LQDARRHRLQIRPVDVQASDWDC 779
            ++Y + WLK H P+ F  A++++     ++ D++   +++ R  +L+I P DV  S++  
Sbjct: 768  VSYQTAWLKAHYPSPFMAAVLSA---DMHNTDKVVILIEECRSMKLRIDPPDVNVSEFKF 824

Query: 780  SLEPIDGAQPAIRMGLRMIAGLREEEGRRIETAR-ERGVFSDIADLDARAGL---DARTQ 835
            ++   DG    I  GL  + G+ E     I   R E G F D+ D  AR  L   + RT 
Sbjct: 825  TVND-DG---RIVYGLGAVKGVGEGPVEAIAECRAEGGPFKDLFDFCARIDLKRINKRTL 880

Query: 836  ALLADAGAL-----------RALADNRHKARWEVAGVHKQ----------------LGLF 868
              L  +GAL           +A   N  + R  +    ++                + LF
Sbjct: 881  EALIRSGALDRLGPYFFEEAKAYQANIDRNRAVLLAAMEEAVQAAEQTARSAESGHMDLF 940

Query: 869  AGLPSPDEAVV-----ALPAPTVGEDLQADYATVGTTLGPHPLALLRTELRKRRCRSSQE 923
             GL +  EA V          ++ E L+ +  T+G  L  HP+     E+R+    + Q 
Sbjct: 941  GGLFAEPEADVYANHRNARELSLKERLKGEKDTLGLYLTGHPIDEYEGEVRR---FARQR 997

Query: 924  LMLVEHGR-NVSIAGLVTG----RQRPGTASGVTFVTLEDEFGNLNVVVWRDLAERQRQA 978
            ++ +   R   +IAGL+      + + G   G  F+TL+D  G +   ++ +     +  
Sbjct: 998  IIDLRPARGEQTIAGLIVNLRVMKNKKGDKMG--FITLDDRSGRIEASLFAEAFNSAQAL 1055

Query: 979  LVGSRLLKVDG 989
            L    L+ V+G
Sbjct: 1056 LQTDALVVVEG 1066