Pairwise Alignments

Query, 1023 a.a., error-prone DNA polymerase from Pseudomonas fluorescens SBW25

Subject, 1116 a.a., DNA polymerase III subunit alpha from Sinorhizobium meliloti 1021

 Score =  835 bits (2157), Expect = 0.0
 Identities = 474/1059 (44%), Positives = 641/1059 (60%), Gaps = 42/1059 (3%)

Query: 3    YAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLAGIVRAWQAAKAVELPLI 62
            + EL   +NFSF  GA+ A E+   AK+ G + L I D  ++AG+VRA   AK    P  
Sbjct: 7    FCELGARTNFSFLEGAAPAEEMVVFAKKAGLAGLGIADRNSVAGVVRAHAKAKVEGYPFQ 66

Query: 63   IGSEVRIENG-PKLVLLVEDLSGYQHLCRLITLARRRAEKGSYRLLLEDFDQPLPGLLAL 121
             G+ +   +G P ++   ++  G+ HLCRL++    R++KG   L L D  +    LL +
Sbjct: 67   PGARLVFADGTPDILAYPKNRRGWGHLCRLLSAGNLRSKKGDCTLHLADLLEWQEELLLI 126

Query: 122  WVA-----EDSDTQASIQWLRRTFAERLWLAVHLHCGQDDAHRLEQRLNLAASLRIPAVA 176
             +      E    +  +  L+     RL+L +  H    D H       +A    I  +A
Sbjct: 127  VMQGEGRPEPESLEVLLGTLKEHAGNRLYLGLAPHYDGFDRHDFAVLAAIARKAGIGLLA 186

Query: 177  CGDVHMHARGRRALQDTMTAIRHHVPVAEAGTRLHPNGERHLRSLDALAAL---YPHALL 233
              D   H    R L D +T+IR HVP+A AG  L  N ERHL+    +A L   YP A+ 
Sbjct: 187  TNDALYHDPHYRPLADVVTSIREHVPIAGAGFLLQKNAERHLKGPREMARLFSDYPEAIA 246

Query: 234  DETQAIARRCTFDLSQLRYHYPRELVPEGHDAESWLRAVTEAGIAQRWPQGVDAHTLQQI 293
            + T+   R   F L +L + YP E       AES  R V E G A+R+P+GV    ++QI
Sbjct: 247  N-TRKFFRELAFSLDELSHQYPDENADGETPAESLRRLVAE-GAAERYPEGVPEKVMRQI 304

Query: 294  HKELALISELGYESYFLTVHDIVRFARSRSILCQGRGSAANSAVCFALGITEIDPSLTSM 353
              EL LI +  YE YFLTVH +V+FARS +ILCQGRGSAANS+VCF LGIT++DP   ++
Sbjct: 305  DYELELIHDKKYEPYFLTVHKLVKFARSVNILCQGRGSAANSSVCFCLGITDVDPQKFTL 364

Query: 354  LFERFLSKERNEPPDIDVDFEHERREEVLQYVFQRYGRTRAALTAVVSSYHAAGAVRDVA 413
            LF+RFLSK+R+EPPDIDVDFEHERREEV+QY+++ YG+  A LTA V SY +  A R+VA
Sbjct: 365  LFDRFLSKDRDEPPDIDVDFEHERREEVIQYIYRTYGKEHAGLTAAVISYRSRSAGREVA 424

Query: 414  KALGLPPDQVNALADCCGRWSDDAPPLERLREGGFDPQSPILRRVLTLTQQLIGFPRHLS 473
            KA GL  D  +AL      W       E+ +  G D   P+ RRVL     L+ FPRHLS
Sbjct: 425  KAFGLSEDVQSALVSSIWGWGTSPFTEEQAKGAGLDAADPLTRRVLAYASLLMNFPRHLS 484

Query: 474  QHPGGFVISEYPLDTLVPVENAAMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCF 533
            QH GGFVI+   LD +VP+ N AM +R +I+WDKDDLD + +LKVD+LALGML+ + + F
Sbjct: 485  QHVGGFVITRDRLDEVVPIMNTAMPDRYMIEWDKDDLDELKILKVDVLALGMLTCLAKGF 544

Query: 534  DLLRRHRNRDFSLASLPKED-PATYAMISKADTIGVFQIESRAQMSMLPRLRPQTFYDLV 592
             LL  H     +LA + ++   A Y MI +ADT+GVFQIESRAQMSMLPRL+P+  YDLV
Sbjct: 545  KLLEAHYGEPITLAEIYQDHRDAVYDMICRADTVGVFQIESRAQMSMLPRLQPREMYDLV 604

Query: 593  IEVAIVRPGPIQGGMVHPYLRRRNKE---EETTYPSPELEVVLQRTLGIPLFQEQVMQIA 649
            IEVAIVRPGPIQG MVHPYL+RR  +   E   YPSPEL+ VL+RTLG+PLFQEQ MQIA
Sbjct: 605  IEVAIVRPGPIQGNMVHPYLKRREAQRRGEAVVYPSPELKAVLERTLGVPLFQEQAMQIA 664

Query: 650  MVAADYGPGEADQLRRSMAAWKRHGGLEPHQERLRTGMLKNGYSEEFAAQIFEQIKGFGS 709
            + AA + P EAD+LRR+MA +KR G +   + ++  GM+ N Y  EFA + F QIKGFG 
Sbjct: 665  ITAAGFSPSEADRLRRAMATFKRTGTIHTFERKMVEGMVANDYEREFAERCFNQIKGFGE 724

Query: 710  YGFPESHAASFALLTYASCWLKCHEPAAFACALINSWPMGFYSPDQILQDARRHRLQIRP 769
            YGFPESHAASFA L YAS WLK + P  F  AL+N+ PMGFY+P Q+++DAR H +++ P
Sbjct: 725  YGFPESHAASFASLVYASAWLKTYYPDIFCAALLNAQPMGFYAPAQLVRDAREHGVRMLP 784

Query: 770  VDVQASDWDCSLE------------------PIDGAQPAIRMGLRMIAGLREEEGRRIET 811
            VD+  SDWD  LE                   +   + A+R+G R++ GL++ + + +  
Sbjct: 785  VDINHSDWDALLEGEGAFDKNAVHPRHASMREVIKTRKAVRLGFRLVKGLKQTDMKALVA 844

Query: 812  ARERGVFSDIADLDARAGLDARTQALLADAGALRALADNRHKARWEVAGVHKQ-----LG 866
             R  G +  + DL  R+GL       LADA A R++  +R  A W V  + +Q     L 
Sbjct: 845  RRGEG-YRSVHDLWLRSGLSRSVLERLADADAFRSIGLDRRAALWAVKALDEQSAVERLP 903

Query: 867  LFAGLPSPD---EAVVALPAPTVGEDLQADYATVGTTLGPHPLALLRTELRKRRCRSSQE 923
            LF G  S D   E  VALP    GE +  DY T+  +L  HP++ +R +  +R    S++
Sbjct: 904  LFEGAGSDDLQIEPKVALPDMPAGEQVIHDYRTLTLSLKAHPVSFMREDFSRRGILRSRD 963

Query: 924  LMLVEHGRNVSIAGLVTGRQRPGTASGVTFVTLEDEFGNLNVVVWRDLAERQRQALVGSR 983
            L     GR V++AGLV  RQRPG+A+GV F+T+EDE G  N++VW    ++ R+ ++GSR
Sbjct: 964  LAATATGRWVTVAGLVLVRQRPGSANGVIFMTIEDETGIANIIVWEKTFQKYRRQVMGSR 1023

Query: 984  LLKVDGRWEAVGEVRHLIAGRLTDLTPLLEGIPVRSRDF 1022
            L+KV GR +    V H++A  L D+TP+L  +   +R F
Sbjct: 1024 LVKVRGRLQNQSGVIHVVADHLEDITPMLGLLRREARRF 1062