Pairwise Alignments

Query, 1023 a.a., error-prone DNA polymerase from Pseudomonas fluorescens SBW25

Subject, 1169 a.a., DNA polymerase III subunit alpha from Sinorhizobium meliloti 1021

 Score =  365 bits (937), Expect = e-104
 Identities = 307/1056 (29%), Positives = 482/1056 (45%), Gaps = 96/1056 (9%)

Query: 3    YAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLAGIVRAWQAAKAVELPLI 62
            +  L   S +S   GA    ++  +A      A+ I D   L   +   Q A    L  I
Sbjct: 23   FVHLRVHSAYSLLEGALPLKKIIGKAVADDQPAIGIADTNNLFAALEFSQKAADDGLQPI 82

Query: 63   IGSEVRIENG-----------------PKLVLLVEDLSGYQHLCRLITLARRRAEK---- 101
            IG ++ I+                   P +VL+     GY  L  L++ A    E     
Sbjct: 83   IGCQLSIDMEDEAEGERRGHAHQFVKLPAIVLIAATEDGYARLVELVSRAYLEGEGHQQT 142

Query: 102  ----------GSYRLLLEDFDQPLPGLLALWVAEDSDTQASIQWLRRTFAERLWLAVHLH 151
                      G+  L+        P  +AL     +  +A ++ L   F +RL++ +  H
Sbjct: 143  RISRSWLAAGGTTGLIALTGAGAGPVDMALKSGSPALAEARLKALIELFGDRLYVELQRH 202

Query: 152  CGQDDAHRLEQRLNLAASLRIPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAGTRLH 211
               D  H   + ++LA  L IP VA  +    +       D + A+ H+  V++  +R  
Sbjct: 203  GNYDRRHE-NRMIDLAYRLDIPLVATNEAFFPSPSDYDAHDALMAVAHNAMVSD-DSRFR 260

Query: 212  PNGERHLRSLDALAALY---PHALLDETQAIARRCTFDLSQLRYHYPR-----ELVPEGH 263
               + +L+S   +AAL+   P AL + T  +ARRC+F L       PR     +   E  
Sbjct: 261  LTPDHYLKSRKEMAALFADLPEAL-ENTIEVARRCSFMLKTRGPILPRFTGASDDPEEAE 319

Query: 264  DAE-SWLRAVTEAGIAQRW------PQGVDAHTLQQIHKELALISELGYESYFLTVHDIV 316
             AE + LR   E G+ +R       P   +    +++  EL +I  + +  YFL V D +
Sbjct: 320  RAEVAELRRQAEEGLEERLAKLGMAPGYKEEDYRERLAFELGVIQRMKFPGYFLIVADFI 379

Query: 317  RFARSRSI-LCQGRGSAANSAVCFALGITEIDPSLTSMLFERFLSKERNEPPDIDVDFEH 375
            ++A+   I +  GRGS A S V +AL IT++DP   S+LFERFL+ ER   PD D+DF  
Sbjct: 380  KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDFDIDFCQ 439

Query: 376  ERREEVLQYVFQRYGRTRAALTAVVSSYHAAGAVRDVAKALGLPPDQVNALADCCGRWSD 435
            +RREEV++YV Q+YGR + A      S  A  A+RDV + L +P  QV+ +         
Sbjct: 440  DRREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 499

Query: 436  DAPPLE-------RLREGGFDPQSPILRRVLTLTQQLIGFPRHLSQHPGGFVISEYPLDT 488
            +  PL        RLRE     + P++ R+L + Q++ G  RH S H  G VI + PL  
Sbjct: 500  NPTPLSKAIEEEPRLREEA--EKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSQ 557

Query: 489  LVPVENAAMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRNRDFSLAS 548
            LVP+     ++  + Q++   ++  GL+K D L L  L+ ++   D + + R     LAS
Sbjct: 558  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAIDFVGK-RGIHIDLAS 616

Query: 549  LPKEDPATYAMISKADTIGVFQIESRAQMSMLPRLRPQTFYDLVIEVAIVRPGPIQGGMV 608
            +P +DP TY  +S+ +T+GVFQ+ES      L  +RP    D++  VA+ RPGP++   +
Sbjct: 617  IPLDDPKTYETLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMEN--I 674

Query: 609  HPYLRRRNKEEETTYPSPELEVVLQRTLGIPLFQEQVMQIAMVAADYGPGEADQLRRSMA 668
              Y  R++ EEE     P+++ +L+ T G+ ++QEQVMQIA V + Y  GEAD LRR+M 
Sbjct: 675  PVYNARKHGEEEIESIHPKIDYLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMG 734

Query: 669  AWKRHGGLEPHQERLRTGMLKNGYSEEFAAQIFEQIKGFGSYGFPESHAASFALLTYASC 728
              K    ++  + R   G +KNG S+  A  IF+ +  F +YGF +SHAA++A+++Y + 
Sbjct: 735  K-KIKAEMDKQRARFVDGAVKNGVSKPQADLIFDLLAKFANYGFNKSHAAAYAIVSYQTA 793

Query: 729  WLKCHEPAAFACALINSWPMGFYSPDQI---LQDARRHRLQIRPVDVQASDWDCSLEPID 785
            ++K H P  F  A   S  +   + D+I    QDA R  +Q+    VQ S         +
Sbjct: 794  YMKAHYPVEFLAA---SMTLDMSNTDKINDFRQDAMRLGIQVVAPSVQTSH-----RHFE 845

Query: 786  GAQPAIRMGLRMIAGLREEEGRRIETARERGVFSDIADLDARAG---LDARTQALLADAG 842
                 I   L  + G+ E     I   R    F+ + D   R     L+ R    L  AG
Sbjct: 846  TGDNRIYYSLAALKGVGESAVDHIVAVRGDRPFASLEDFCLRIDPKLLNRRVFESLIAAG 905

Query: 843  ALRALADNRHK------------ARWEVAGVHKQLGLFAGLPSPDEAVVALPAPT---VG 887
            A      +R +             R +   V  Q  +F    +     +ALP  T     
Sbjct: 906  AFDCFGYDRAELIGGLDRILGFAQRAQENKVSGQSDMFGAGAATGPEKIALPPYTPWLAS 965

Query: 888  EDLQADYATVGTTLGPHPLALLRTELRKRRCRSSQEL-MLVEHGRNVS-IAGLVTGRQRP 945
            E L  ++  +G  L  HPL      L K R ++  +    V+ G     +AG VT +Q  
Sbjct: 966  EKLHREFQVLGFYLSAHPLDTYNNLLAKMRVQTFADFSAAVKKGAAAGRLAGTVTSKQER 1025

Query: 946  GTASG--VTFVTLEDEFGNLNVVVWRDLAERQRQAL 979
             T +G  +  V   D  G    V++ ++  + R  L
Sbjct: 1026 KTRTGNKMGIVAFSDASGQFEAVLFSEMLNQYRDLL 1061