Pairwise Alignments

Query, 346 a.a., hypothetical protein from Pseudomonas fluorescens SBW25

Subject, 336 a.a., BNR repeat protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  186 bits (471), Expect = 1e-51
 Identities = 117/347 (33%), Positives = 178/347 (51%), Gaps = 39/347 (11%)

Query: 16  LLATALSLLVGGVSVTPALAASDTVATPAFAIESPKAAKGLMIDVVHAGKRLVAVGDRGH 75
           +L    ++ VG +  +P+ +A     +  F    P AA  L++D+ HAG+ LVAVG+RGH
Sbjct: 5   ILQCVAAISVGCLFFSPSFSAQ----SEHFPQIQPLAASSLVLDIAHAGQHLVAVGERGH 60

Query: 76  ILYSDDQGSTWTQAKVPTRQLLTAVFFIDDKQGWAVGHDAQILASSDGGATWTQQYQDLK 135
           +L   D+   W Q   PT   LT VFF+++K GWAVGHDA IL + DGG TW+ Q Q  +
Sbjct: 61  VLVLTDK---WQQVPTPTSVQLTKVFFLNEKFGWAVGHDATILHTQDGGQTWSLQMQSTE 117

Query: 136 REAPLLDVWFNDANHGLAVGAYGALIETTDGGKTW-----------QDVS--DRLDNEDQ 182
            E P LDV F +   G+A+GAYG    T DGG  W           +DVS    L N DQ
Sbjct: 118 IEKPFLDVLFLNEQEGMAIGAYGLFYRTRDGGANWTEEFHEELLAEEDVSYLAELKNSDQ 177

Query: 183 F-----------HLNAIAHIKDAGLFIVGEQGSMFRSSDDGQTWEKLEGPYEGSLFGVIS 231
                       H N +  +KD  L +VGE G +  S+D GQ++ +    Y+GS+F  I 
Sbjct: 178 AAYLTERASLLPHFNRMIALKDGRLLLVGELGLVAMSADKGQSFTRTGFDYDGSMFNAIQ 237

Query: 232 TAQPQTLLAYGLRGNLYRSTDFGSTWEPVELNAARGALEFGLSGATLLEDGSLVVVGNGG 291
                 +   GLRG+++++    + W+ +++      ++  ++G     + SL +VGN G
Sbjct: 238 L--QDAVYVMGLRGHVFKADLSLAQWDEIDM-----PVKSSINGVMATSETSLYLVGNAG 290

Query: 292 SVVVSHDDGVTFSVFNRPDRISLSSVTAAGNGNLILAGQGGVRVATP 338
            V+  + D  + S+  R    +L S+     GN+ L+G  G+    P
Sbjct: 291 IVIQLNQDD-SSSIVTRRQGENLVSIAKDNQGNVWLSGSQGLLTLKP 336