Pairwise Alignments

Query, 815 a.a., helicase UvrD from Pseudomonas fluorescens SBW25

Subject, 656 a.a., Superfamily I DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  184 bits (467), Expect = 1e-50
 Identities = 132/390 (33%), Positives = 185/390 (47%), Gaps = 53/390 (13%)

Query: 423 ATAGPGFDYKVKGELASAPLLDSFVMAAGFIENLGLDVPTAV-GQMSFAKDDPDRYFFEA 481
           A   PG  + + GE    PL ++F   AGFIE++G+ +     G++  A  + D  F EA
Sbjct: 290 ALKAPGDTFTLAGEFTPLPLYEAFYAQAGFIESIGIRIDQLQPGKLQCAPRERD--FVEA 347

Query: 482 LSIFWKALEDHLLDQSPPIMTYNRMFSLFGENTPENLKLLSDPLLRPLSHLMIDEFQDVS 541
           L  F       L +Q   +MT+N  F    E       +     L P  +L+IDEFQD+S
Sbjct: 348 LVSFHGYFRAALREQG--LMTFNEAFQQLTERLASGSDM-PQACLVPFENLLIDEFQDIS 404

Query: 542 PQIVSWLRASLREIRSRGPAMHVGRGAQRSSLLCVGDDWQSIYGWRGSSPKYFMAFNQEF 601
           PQIV WL+A  R++          R     SL+ +GDDWQSIYGWRGSSP+ FM F++ F
Sbjct: 405 PQIVQWLQALHRQL---------ARQKSSPSLMAIGDDWQSIYGWRGSSPELFMDFDKYF 455

Query: 602 P---SPATTRVMLGENYRSHQHIIDAAEHIVRAAPAIPGKKAKASGAPKALVP------- 651
           P   +  +  ++L  NYRS + +I   E ++     +  K+AK S   K   P       
Sbjct: 456 PRRGAKGSETLLLETNYRSIEPVIRDGEAVL---AGVQFKQAKTSRPCKPTQPGDHGVKL 512

Query: 652 ----------VKVLERDDAALGRQLAEHYQRGESVLMLYRRSSDKLLIQEHIQSVVNLDS 701
                      K++E   A          +   +VL+L RR+     IQ        LD 
Sbjct: 513 VTGFELNKGLPKLIEAITAQCAHVAERQSRERTAVLLLSRRNEPLRTIQ------AQLDR 566

Query: 702 SLPPPARRLKQLTYHSAKGLQADAVFLLGDCQHVTSSPYKNQVYRMAGLGKDGDSEPYDT 761
            LP     +K  T H AKGLQA+   ++ DC  V   P +N +Y  +G  ++     YD 
Sbjct: 567 KLP-----VKAYTIHRAKGLQAEVAIIVDDCAPVQPHPLRNALYAYSGFFRNS----YDQ 617

Query: 762 AQKDEVLRLAYVGITRAVSHCYWYVEKPEG 791
           A  DE LRL YV ITR VS  +WY  K +G
Sbjct: 618 AMADESLRLGYVAITRGVSRVFWYTRKAQG 647



 Score =  100 bits (248), Expect = 3e-25
 Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 5/156 (3%)

Query: 128 PSTAQWKMIFSDTPSTSVIAGAGAGKSTSLVLRILLLTHYLGFELSSMTVVTFTRESRKD 187
           PS  QW MI S +P T + AGAG+GKST+L+LR++ +  ++G E   +TV++FT  S   
Sbjct: 117 PSEEQWAMILSRSPVTRIFAGAGSGKSTTLLLRVVFMLCHMGIEPGRLTVISFTNASCAQ 176

Query: 188 FISKLMQIFSVWGQPIDMKEAQGVVRTFHSRILPMVRSLPGFERLQAFENLNTGFEDAD- 246
              +L+++   W  P D ++A+  VRTFHS +  + R +   ER   FE L+     AD 
Sbjct: 177 LREQLVRVLGFWQVPFDAQQARQCVRTFHSAMAQLAREV--LERPVWFEQLDDKAAAADE 234

Query: 247 -SNPF-DLRINEAQRQQMNACYHRLHGQHTRFRELI 280
             NP    R+  AQ + +   Y + + +   FREL+
Sbjct: 235 PDNPLATARLRPAQVRLLKQAYQQCYAEQATFRELV 270