Pairwise Alignments

Query, 815 a.a., helicase UvrD from Pseudomonas fluorescens SBW25

Subject, 726 a.a., DNA-dependent helicase II (RefSeq) from Shewanella loihica PV-4

 Score = 63.5 bits (153), Expect = 4e-14
 Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 17/109 (15%)

Query: 531 HLMIDEFQDVSPQIVSWLRASLREIRSRGPAMHVGRGAQRSSLLCVGDDWQSIYGWRGSS 590
           ++++DEFQD +    +W+R                     ++++ VGDD QSIYGWRG+ 
Sbjct: 216 NILVDEFQDTNAIQYAWIRVL---------------AGSTANVMIVGDDDQSIYGWRGAQ 260

Query: 591 PKYFMAFNQEFPSPATTRVMLGENYRSHQHIIDAAEHIVRAAPAIPGKK 639
            +    F Q+FP+  T R  L +NYRS  +I++A+  ++   P   GKK
Sbjct: 261 VENLHRFLQDFPAAQTIR--LEQNYRSSGNILNASNELIANNPDRLGKK 307



 Score = 33.9 bits (76), Expect = 3e-05
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 16/71 (22%)

Query: 713 LTYHSAKGLQADAVFLLGDCQHVTSSPYKNQVYRMAGLGKDGDSEPYDTAQKDEVLRLAY 772
           +T HSAKGL+   VF+ G    V    + +Q+        +GD       + DE  RL Y
Sbjct: 557 MTLHSAKGLEFPMVFMAG----VEEGIFPSQMAM-----DEGD-------RLDEERRLCY 600

Query: 773 VGITRAVSHCY 783
           VG+TRA+   Y
Sbjct: 601 VGMTRAMKQLY 611



 Score = 28.1 bits (61), Expect = 0.002
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 142 STSVIAGAGAGKSTSLVLRILLLTHYLGFELSSMTVVTFTRESRKDFISKLMQI 195
           S  V+AGAG+GK+  L  RI  L         S+  VTFT ++  +   ++ ++
Sbjct: 24  SMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVTFTNKAAAEMRERVEKV 77