Pairwise Alignments

Query, 471 a.a., TolC family protein from Pseudomonas fluorescens SBW25

Subject, 480 a.a., efflux transporter outer membrane subunit from Pseudomonas fluorescens SBW25-INTG

 Score =  239 bits (609), Expect = 2e-67
 Identities = 158/461 (34%), Positives = 242/461 (52%), Gaps = 11/461 (2%)

Query: 11  LVLALSAC-AVGPDYKTQTPEAANI-----TAAADAKQYDHAKFEGIWWQQFEDPTLNQL 64
           L + LSAC  VGPDY      A N        A +      A     WW+ ++DP L++L
Sbjct: 10  LGVLLSACQVVGPDYTLPEKSAINRGDLQGQLAGEGHNVVSAPVPADWWKLYKDPRLDEL 69

Query: 65  VTQSLQGNRDLRVAFARLRAARAIRDDASNDAMPTITSRASSD--QGKGQIPGQTTRRVK 122
           V Q++  N DLRVA A L+ AR     A +    ++ ++A +   Q  G+    + +   
Sbjct: 70  VRQAMASNTDLRVAAANLQRARYQTQQAESAGGWSVGAKAEAQRLQESGEAFLLSEKVPV 129

Query: 123 TERYDLGLDMAWELDLFGRIQRNLEATDADQQAAEADLYQLQVTLIAELVDAYGQLRGAQ 182
                +G+  +++ DLFG +QR +E+  A   AA+A     ++TL+A++V +Y Q+  A 
Sbjct: 130 GNIGSVGITTSYQFDLFGTLQRGIESAQASADAAQAAADIARITLVADVVRSYTQVCAAN 189

Query: 183 LRERIALDNLKNQQESRTITVSLRDAGVGDQLDVERADARLAAVEASVPQLQAEQVRERN 242
               IA ++L  Q +S  +T  LRDAG GD+  V R+  +  ++ A +P+ QA +     
Sbjct: 190 EELAIANESLDLQAQSTKLTQRLRDAGRGDETQVTRSQTQYKSLRADMPRYQALRQAGLF 249

Query: 243 RIATLLGQRPDKLSVDLGP-KDLPAIAKALPIGDPGQLLQRRPDILSAERKLAAATARIG 301
           R++ LL +  D+L    G   +LP IA+ LP+GD   LL+RRPD+  AER+LAAATARIG
Sbjct: 250 RLSMLLAKPLDQLPAGTGTCAELPHIAQLLPVGDGATLLKRRPDVRQAERQLAAATARIG 309

Query: 302 VAKADLFPRVSLSGFLGFTAGRGSQIGSSAANAWALGPSITWAAFDLGSVRARLRGADAE 361
           VA   L+P +S+   +G T G    +G+ A N W  GP I+W     G+ RAR+  A+A 
Sbjct: 310 VATGALYPDISIGATVG-TVGLLDNLGTPATNRWGFGPMISWTVPTNGA-RARIHEAEAA 367

Query: 362 ADGALASYEQQVLLALEESENAFSDYGKRQQRLVSLIRQSESSRAAADLAAIRYREGTVD 421
             GALA ++  VL A+ E++   + Y  + QR  +L    ES++ AA      ++ G   
Sbjct: 368 TQGALAHFDGVVLNAIRETQTGLAQYTAQLQRRDALAEAGESAKEAAGQTHRFFQAGRAS 427

Query: 422 FLVLLDAQRERLAAEDSQAQAEVDLYRGIVAIYKALGGGWK 462
           FL  L A R         A A   +    + ++ ALGGGW+
Sbjct: 428 FLADLQATRTYTDVRAQLAAANTQVAMSQIDLFLALGGGWE 468